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NC_048702.1__YP_009837616.1__HWB57_gp017__00017

Bact-Vir

NC_048702.1__YP_009837616.1__HWB57_gp017__00017

Identity

Accession:
NC_048702 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Nezavisimistyvirus› Erwinia_phage_vB_EamM-Bue1

TaxID: 2099338

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-77
PDB
Domain cluster: rep: MW824434.1__QZI93307.1__SIPHO075v1_p0084__00084__D7-61
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 48.0 4.12e-01 81.1% 92.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.63 39.0 3.64e-01 91.9% 47.9%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.32e-01 100.0% 79.7%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.14e-01 100.0% 65.5%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 36.0 4.32e-01 100.0% 95.9%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.58 43.0 3.61e-01 97.3% 45.8%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.57 43.0 3.93e-01 98.6% 60.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.56 36.0 4.20e-01 100.0% 96.1%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.54 35.0 3.84e-01 100.0% 86.2%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 41.0 3.41e-01 95.9% 45.2%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.98e-01 100.0% 80.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.72e-01 100.0% 94.3%
3s24A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 34.0 3.25e-01 81.1% 56.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.23e-01 100.0% 62.0%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.23e-01 100.0% 74.7%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.57 40.0 3.97e-01 100.0% 68.8%
3296140 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.57 50.0 3.13e-01 100.0% 16.6%
4976896 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 38.0 3.51e-01 100.0% 53.7%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 3.12e-01 100.0% 27.6%
3213725 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.55 42.0 2.91e-01 83.8% 85.8%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.39e-01 100.0% 53.7%
5074282 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 33.0 3.76e-01 79.7% 81.8%
5055961 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 34.0 3.39e-01 100.0% 60.0%
3784412 5.1.4.44 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1_2 0.53 45.0 2.78e-01 97.3% 22.6%
3995638 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 38.0 3.22e-01 77.0% 52.3%
5012680 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.53 47.0 4.14e-01 100.0% 74.5%
3721787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.96e-01 100.0% 74.1%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.01e-01 100.0% 75.5%
5030556 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.52 37.0 3.61e-01 78.4% 67.1%
4998648 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.52 35.0 3.28e-01 85.1% 54.7%
3501337 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.52 42.0 4.12e-01 100.0% 81.2%
3668429 3257.1.1.0 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain 0.52 42.0 3.50e-01 94.6% 62.5%
3298321 3274.1.1.1 ↗ extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.51 37.0 3.17e-01 78.4% 46.0%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.51 44.0 4.04e-01 100.0% 72.0%
3336892 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.51 37.0 3.18e-01 78.4% 45.6%
3798455 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 37.0 3.33e-01 78.4% 52.7%
4581369 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.51 39.0 3.50e-01 100.0% 58.1%
3636066 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.51 43.0 3.47e-01 100.0% 73.8%
4943159 330.1.1.21 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5_C 0.51 36.0 3.31e-01 77.0% 54.3%
4016602 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.51 45.0 3.67e-01 100.0% 75.5%
4196939 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.50 36.0 3.55e-01 77.0% 87.5%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.50 34.0 3.16e-01 100.0% 53.0%
3595183 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 36.0 3.65e-01 78.4% 77.3%