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NC_048702.1__YP_009837640.1__HWB57_gp041__00041

Bact-Vir

NC_048702.1__YP_009837640.1__HWB57_gp041__00041

Identity

Accession:
NC_048702 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Nezavisimistyvirus› Erwinia_phage_vB_EamM-Bue1

TaxID: 2099338

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-92
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxk00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 36.0 3.99e-01 77.5% 79.7%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 37.0 2.96e-01 95.5% 31.1%
2p62A01 3.40.50.10620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains 0.58 42.0 3.54e-01 86.5% 45.3%
2e6mA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 40.0 3.24e-01 83.1% 37.6%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 38.0 3.18e-01 86.5% 45.0%
2kinA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 43.0 3.22e-01 92.1% 71.8%
3dghA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 35.0 3.27e-01 70.8% 67.0%
6grrA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.68e-01 94.4% 68.9%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 33.0 3.57e-01 77.5% 81.7%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.50 36.0 2.92e-01 75.3% 55.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988477 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.59 42.0 2.98e-01 79.8% 23.6%
3909552 316.1.1.37 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › FKTN_N 0.56 45.0 3.47e-01 88.8% 58.7%
3845467 316.1.1.37 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › FKTN_N 0.56 44.0 3.31e-01 86.5% 53.3%
3372965 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 28.0 2.92e-01 97.8% 51.2%
5719 211.1.1.3 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › 3-dmu-9_3-mt 0.55 38.0 4.21e-01 80.9% 95.6%
5068841 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.55 43.0 3.20e-01 85.4% 75.3%
4021165 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 40.0 4.29e-01 84.3% 100.0%
3216170 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 34.0 3.60e-01 94.4% 71.2%
4257413 7579.1.1.28 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S28 0.53 38.0 2.56e-01 75.3% 67.1%
3726000 211.1.1.3 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › 3-dmu-9_3-mt 0.53 39.0 4.20e-01 83.1% 96.0%
4657309 2011.2.1.11 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC1 0.53 41.0 3.09e-01 86.5% 88.7%
3190674 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 36.0 3.60e-01 96.6% 70.0%
4928243 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.52 32.0 3.24e-01 93.3% 60.0%
5078463 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.52 45.0 3.55e-01 100.0% 71.0%
5027666 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.52 39.0 2.96e-01 83.1% 36.3%
6428 243.5.1.2 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN3 0.51 39.0 3.61e-01 94.4% 63.5%
3484074 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.50 37.0 3.21e-01 77.5% 99.3%
3593385 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.50 43.0 3.30e-01 100.0% 68.4%
3608890 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.50 42.0 3.24e-01 100.0% 56.7%