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NC_048702.1__YP_009837649.1__HWB57_gp050__00050

Bact-Vir

NC_048702.1__YP_009837649.1__HWB57_gp050__00050

Identity

Accession:
NC_048702 ↗
Kingdom:
phage

Quality

58.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Nezavisimistyvirus› Erwinia_phage_vB_EamM-Bue1

TaxID: 2099338

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: rep: NC_048709.1__YP_009838344.1__HWB64_gp129__00129__D2-57
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.71 49.0 4.55e-01 73.1% 79.1%
3e3rB01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 47.0 4.34e-01 80.6% 90.6%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.79e-01 88.1% 92.0%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 46.0 4.56e-01 91.0% 79.7%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.84e-01 85.1% 59.8%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 43.0 4.21e-01 80.6% 98.6%
2np2A00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.57 40.0 3.46e-01 73.1% 82.4%
3lapA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.41e-01 83.6% 89.7%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 50.0 3.20e-01 100.0% 66.1%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.35e-01 88.1% 93.9%
4behA01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 41.0 4.20e-01 82.1% 82.8%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 46.0 3.57e-01 100.0% 81.2%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.22e-01 88.1% 91.0%
2lruA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 41.0 3.68e-01 83.6% 67.3%
1wlzA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 39.0 3.71e-01 77.6% 88.7%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.54 39.0 3.42e-01 77.6% 89.2%
3qrxA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 42.0 4.25e-01 86.6% 91.2%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 43.0 2.98e-01 92.5% 81.5%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 39.0 3.28e-01 92.5% 97.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029219 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 51.0 5.59e-01 73.1% 87.3%
3504540 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 45.0 4.92e-01 80.6% 81.8%
4928149 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 45.0 4.90e-01 82.1% 81.8%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 45.0 5.08e-01 80.6% 90.0%
3590551 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 45.0 5.09e-01 80.6% 90.0%
4236554 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 45.0 4.72e-01 80.6% 75.0%
3956565 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.68 45.0 4.13e-01 77.6% 52.9%
4945040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 44.0 4.64e-01 77.6% 75.0%
4145524 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.67 44.0 4.51e-01 80.6% 69.2%
4944585 101.1.2.872 ↗ alpha arrays › HTH › HTH › winged helix domain › rve 0.67 44.0 4.67e-01 80.6% 76.7%
4946654 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 44.0 4.62e-01 80.6% 76.7%
3981939 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.64 45.0 4.90e-01 79.1% 89.1%
3818809 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.63 44.0 4.01e-01 71.6% 70.6%
3899987 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.63 44.0 4.06e-01 79.1% 57.6%
3302017 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.63 42.0 4.10e-01 70.1% 78.7%
3662631 108.1.1.30 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.63 43.0 4.18e-01 71.6% 90.7%
3362305 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.62 49.0 3.91e-01 83.6% 92.8%
3611890 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.62 49.0 5.18e-01 95.5% 95.0%
3630081 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.62 48.0 4.56e-01 83.6% 96.2%
3448237 108.1.1.107 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7, EF-hand_8 0.62 43.0 4.23e-01 71.6% 85.7%
3744236 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.62 42.0 3.99e-01 71.6% 76.2%
3996516 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.61 41.0 3.82e-01 70.1% 69.4%
4028206 108.1.1.74 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7+EF-hand_8 0.61 42.0 4.18e-01 71.6% 81.4%
4029184 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.60 42.0 4.16e-01 71.6% 81.4%
4926842 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.60 36.0 3.22e-01 70.1% 39.0%
3402387 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.60 41.0 3.60e-01 71.6% 60.0%
4979742 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.34e-01 83.6% 68.8%
4016027 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.60 40.0 3.16e-01 70.1% 42.0%
4256263 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.59 43.0 4.17e-01 76.1% 81.3%
3823494 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.59 47.0 4.03e-01 85.1% 91.4%
3577433 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.59 43.0 3.63e-01 79.1% 89.2%
3416399 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.59 42.0 3.68e-01 76.1% 62.0%
3769569 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.58 45.0 4.65e-01 89.6% 87.7%
4231491 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 45.0 3.72e-01 83.6% 60.8%
3309471 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.57 44.0 4.16e-01 82.1% 78.8%
3357833 101.1.2.509 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25879 0.57 44.0 4.20e-01 83.6% 76.2%
4182885 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 39.0 4.01e-01 80.6% 75.4%
3659397 108.1.1.107 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7, EF-hand_8 0.56 42.0 3.77e-01 79.1% 87.8%
4968278 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.56 46.0 4.29e-01 91.0% 91.8%
4207300 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.55 42.0 4.33e-01 80.6% 92.3%
3486222 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 43.0 4.42e-01 85.1% 96.9%
3483854 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 31.0 3.62e-01 73.1% 86.7%
3694189 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.52 39.0 3.93e-01 83.6% 82.9%
4281784 108.1.1.104 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 0.50 41.0 3.75e-01 86.6% 88.2%
D2 high residues 305-344
PDB
D3 high residues 362-474
PDB
Domain cluster: rep: LC373201.2__BBK03835.1__X__00215__D1-109