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NC_048702.1__YP_009837749.1__HWB57_gp150__00150

Bact-Vir

NC_048702.1__YP_009837749.1__HWB57_gp150__00150

Identity

Accession:
NC_048702 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Nezavisimistyvirus› Erwinia_phage_vB_EamM-Bue1

TaxID: 2099338

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-51
PDB
Domain cluster: rep: MW735835.1__QTH80463.1__PA10_00265__00263__D2-53
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xigA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 41.0 2.55e-01 72.0% 21.1%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.60 40.0 2.97e-01 70.0% 39.0%
2i2cA01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.59 41.0 3.21e-01 76.0% 63.2%
5c9iD01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.59 44.0 3.07e-01 80.0% 42.2%
2an1D01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.58 40.0 3.10e-01 76.0% 57.9%
1qr0A02 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.57 40.0 3.19e-01 86.0% 35.9%
1vyiA00 1.20.120.820 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain 0.57 39.0 3.06e-01 72.0% 72.1%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.39e-01 78.0% 78.3%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.56 38.0 2.85e-01 70.0% 39.0%
1cp9A01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.55 37.0 2.73e-01 70.0% 75.3%
1ultB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 42.0 2.45e-01 82.0% 30.6%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.54 40.0 2.53e-01 82.0% 60.9%
3lhhA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 41.0 3.40e-01 92.0% 56.2%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.53 38.0 2.73e-01 78.0% 96.9%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 31.0 3.14e-01 100.0% 57.7%
4q7aA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 42.0 2.77e-01 96.0% 50.6%
1yt5A01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.52 38.0 2.99e-01 86.0% 53.8%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 32.0 3.18e-01 100.0% 55.4%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 44.0 2.83e-01 100.0% 79.9%
4yzrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 39.0 2.38e-01 88.0% 54.9%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 37.0 3.55e-01 78.0% 84.2%
6e2gC01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.50 34.0 2.21e-01 72.0% 25.7%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 34.0 2.36e-01 72.0% 98.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974474 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 37.0 3.01e-01 72.0% 32.2%
396210 4014.1.1.1 ↗ a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.63 45.0 2.96e-01 78.0% 30.8%
3989299 2004.1.1.120 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.61 42.0 2.46e-01 72.0% 40.8%
3735991 109.4.1.526 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.58 39.0 2.21e-01 70.0% 6.3%
3397502 4012.4.1.0 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.56 39.0 4.27e-01 98.0% 90.0%
3612587 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.56 45.0 4.26e-01 90.0% 96.7%
3284480 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.56 42.0 2.93e-01 82.0% 68.8%
3738814 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.54 47.0 2.87e-01 98.0% 46.3%
3172479 4012.4.1.0 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.53 40.0 4.22e-01 96.0% 93.3%
4200968 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.52 39.0 3.42e-01 86.0% 81.2%
3723264 4012.4.1.0 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.52 40.0 4.26e-01 94.0% 93.3%
4028109 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.51 40.0 3.75e-01 90.0% 93.8%
4180016 301.8.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N 0.50 42.0 3.21e-01 94.0% 69.6%
4945161 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.50 38.0 2.64e-01 84.0% 31.1%
3945508 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.50 40.0 2.77e-01 96.0% 44.5%
D2 high residues 54-103
PDB
Domain cluster: rep: MW735835.1__QTH80463.1__PA10_00265__00263__D2-53
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z7mC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 42.0 2.60e-01 70.0% 96.4%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.60 41.0 3.10e-01 70.0% 63.0%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 39.0 2.67e-01 72.0% 85.9%
2gqcA01 3.30.70.2080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 36.0 3.53e-01 96.0% 55.4%
5aiuA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 47.0 3.65e-01 100.0% 78.0%
4wqkA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 39.0 2.66e-01 72.0% 82.9%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.27e-01 96.0% 58.1%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.54 36.0 2.75e-01 70.0% 39.0%
2cshA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 33.0 2.77e-01 74.0% 34.4%
1jnrA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.47e-01 86.0% 68.4%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 41.0 2.77e-01 90.0% 87.3%
4e9jB01 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 46.0 3.39e-01 100.0% 85.5%
2an1D01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.52 40.0 3.08e-01 90.0% 84.2%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 41.0 2.39e-01 86.0% 71.0%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.36e-01 76.0% 63.9%
3euhD01 1.10.10.2250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 33.0 3.01e-01 76.0% 45.7%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.43e-01 88.0% 83.5%
1yt5A01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.51 37.0 2.94e-01 86.0% 54.6%
1xb4B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.13e-01 72.0% 65.3%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 2.93e-01 98.0% 49.2%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 32.0 3.12e-01 100.0% 57.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3636974 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.69 49.0 3.92e-01 90.0% 38.0%
3974474 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 37.0 3.04e-01 74.0% 33.3%
3738814 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.60 41.0 2.52e-01 72.0% 19.4%
3397502 4012.4.1.0 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.55 39.0 4.24e-01 98.0% 92.5%
3587302 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.54e-01 82.0% 90.0%
3297654 64.1.1.18 ↗ beta meanders › WW domain-like › WW domain › WW domain › GUB_WAK_bind 0.54 43.0 3.44e-01 98.0% 80.0%
3989154 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.38e-01 78.0% 88.7%
4626502 242.1.1.6 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA 0.54 36.0 2.75e-01 72.0% 69.6%
165079 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.53 36.0 3.31e-01 82.0% 52.2%
3466949 101.1.2.524 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.53 35.0 2.64e-01 76.0% 29.6%
4962431 2003.1.3.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › CoA_transf_3 0.53 45.0 2.69e-01 96.0% 44.3%
4034117 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.53 38.0 3.35e-01 82.0% 87.1%
3172479 4012.4.1.0 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.53 39.0 4.07e-01 98.0% 91.1%
3726808 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.53 38.0 2.70e-01 80.0% 40.6%
4472417 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.52 41.0 2.95e-01 96.0% 51.1%
3945508 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.50 41.0 2.84e-01 94.0% 36.5%
D3 high residues 110-169
PDB
Domain cluster: rep: MZ188976.1__QVJ82358.1__JK004_1__00001__D61-115
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02413.23 best Caudo_TAP 71.3 1.30e-19 100.0% 45.0%