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NC_048707.1__YP_009838127.1__HWB62_gp04__00004

Bact-Vir

NC_048707.1__YP_009838127.1__HWB62_gp04__00004

Identity

Accession:
NC_048707 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Guelinviridae› Brucesealvirus› Clostridium_phage_CPS2

TaxID: 2175605

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-99
PDB
Domain cluster: rep: rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00008__D11-120
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04026.18 best SpoVG 61.2 1.30e-16 87.6% 95.1%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i9xA00 3.30.1120.40 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G 0.90 73.0 7.78e-01 89.7% 95.3%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.60 35.0 3.55e-01 97.9% 57.9%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.59 36.0 3.67e-01 95.9% 60.6%
1kqfA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 41.0 3.15e-01 75.3% 91.2%
6jzaA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.58 26.0 2.90e-01 99.0% 50.6%
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.56 41.0 4.00e-01 90.7% 69.4%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 28.0 3.40e-01 82.5% 75.9%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 39.0 3.07e-01 92.8% 35.2%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 33.0 3.34e-01 79.4% 60.0%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.53 31.0 3.74e-01 80.4% 96.5%
1u9yA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 35.0 3.07e-01 87.6% 43.3%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 26.0 2.92e-01 97.9% 59.7%
3foeA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 24.0 2.83e-01 80.4% 60.9%
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.51 29.0 3.50e-01 84.5% 84.8%
1jeyA02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.50 40.0 3.75e-01 87.6% 81.0%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 32.0 3.30e-01 83.5% 66.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4610901 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.96 80.0 8.54e-01 90.7% 97.6%
4037529 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.93 79.0 8.04e-01 91.8% 89.5%
4053035 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.93 76.0 8.19e-01 88.7% 97.6%
4338613 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.93 76.0 8.17e-01 90.7% 97.6%
3943893 304.28.1.2 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG 0.64 44.0 4.48e-01 90.7% 71.6%
3242234 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 45.0 2.80e-01 89.7% 14.0%
3400395 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 36.0 3.45e-01 86.6% 53.0%
4948486 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.56 31.0 3.84e-01 80.4% 100.0%
2032855 9.28.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C 0.56 33.0 3.32e-01 89.7% 55.4%
4956725 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.55 45.0 3.78e-01 92.8% 92.4%
3282392 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 32.0 3.33e-01 84.5% 60.7%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.55 41.0 4.06e-01 87.6% 76.0%
3925555 331.23.1.4 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.55 31.0 3.55e-01 100.0% 78.5%
3444901 4954.1.1.0 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.53 33.0 2.79e-01 85.6% 34.3%
4928783 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 32.0 3.83e-01 73.2% 93.7%
4527800 1033.1.1.3 ↗ beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore, PF30720 0.51 44.0 2.60e-01 96.9% 12.9%
4934021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.37e-01 73.2% 61.7%
4662378 1032.1.1.0 ↗ alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.51 44.0 2.55e-01 95.9% 12.9%