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NC_048709.1__YP_009838287.1__HWB64_gp072__00072

Bact-Vir

NC_048709.1__YP_009838287.1__HWB64_gp072__00072

Identity

Accession:
NC_048709 ↗
Kingdom:
phage

Quality

69.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Campanilevirus› Vibrio_phage_YC

TaxID: 2267403

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 112-187
PDB
D2 medium residues 31-111_239-264
PDB
D3 medium residues 191-238_265-316
PDB
Domain cluster: rep: FN667788.1__CBJ93995.1__CPT_0186__00186__D194-234_266-310
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 36.0 3.99e-01 85.0% 59.8%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 38.0 4.12e-01 98.0% 68.2%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 37.0 3.97e-01 88.0% 66.3%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 36.0 3.89e-01 84.0% 66.7%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.63 37.0 3.84e-01 92.0% 61.5%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 3.81e-01 98.0% 63.3%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 41.0 4.03e-01 92.0% 65.4%
3encA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.60 36.0 3.95e-01 84.0% 74.7%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.59 38.0 3.32e-01 88.0% 42.8%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 32.0 3.54e-01 87.0% 65.0%
3kp0A03 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.58 37.0 4.30e-01 98.0% 97.0%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 41.0 3.55e-01 92.0% 50.6%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 4.33e-01 100.0% 78.1%
3g88A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 36.0 2.71e-01 98.0% 28.0%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.54 38.0 3.90e-01 88.0% 74.0%
7c1hB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 33.0 2.78e-01 81.0% 33.7%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 4.04e-01 89.0% 72.7%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.68e-01 85.0% 69.6%
5aj3F00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.52 37.0 3.44e-01 92.0% 58.5%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 32.0 3.30e-01 82.0% 62.6%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 47.0 4.62e-01 100.0% 100.0%
2ed6A01 2.60.40.2770 Mainly Beta › Sandwich › Immunoglobulin-like › WSSV envelope protein-like 0.52 42.0 3.63e-01 86.0% 99.4%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 42.0 3.73e-01 88.0% 78.5%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 46.0 4.43e-01 100.0% 100.0%
2pokA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 46.0 3.88e-01 100.0% 98.8%
2zogA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 45.0 3.78e-01 100.0% 98.9%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 45.0 4.33e-01 100.0% 100.0%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 41.0 3.55e-01 86.0% 75.7%
4mmoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 45.0 3.83e-01 100.0% 98.8%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944239 1.1.13.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.72 54.0 5.35e-01 87.0% 74.3%
4995818 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 61.0 5.60e-01 99.0% 72.0%
5000612 304.19.1.0 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain 0.68 36.0 4.20e-01 82.0% 72.9%
5004559 1.1.13.75 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.68 54.0 4.83e-01 84.0% 62.2%
4337038 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.67 51.0 3.90e-01 85.0% 36.4%
3284477 304.12.1.2 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.66 39.0 4.19e-01 92.0% 68.2%
4339753 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.66 48.0 3.75e-01 83.0% 35.8%
4116083 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.64 48.0 3.74e-01 86.0% 36.4%
4131480 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.64 35.0 3.88e-01 88.0% 66.3%
4204474 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.62 46.0 3.37e-01 83.0% 29.0%
5062396 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 51.0 4.47e-01 86.0% 65.0%
3784277 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.62 40.0 2.95e-01 85.0% 26.0%
3305434 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 39.0 4.07e-01 99.0% 70.0%
3668582 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.61 49.0 4.67e-01 87.0% 78.3%
3329978 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.61 52.0 4.77e-01 95.0% 98.5%
4515089 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.60 46.0 3.50e-01 86.0% 34.5%
3189301 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.60 46.0 4.47e-01 88.0% 73.6%
3964535 310.3.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO 0.60 39.0 3.74e-01 91.0% 57.4%
3697124 304.133.1.0 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein 0.57 46.0 4.32e-01 85.0% 79.2%
4944050 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.56 44.0 4.32e-01 88.0% 77.3%
4012023 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 39.0 2.90e-01 89.0% 27.4%
5020494 304.18.1.0 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.56 39.0 4.09e-01 100.0% 80.0%
3220442 206.1.1.28 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase 0.55 49.0 3.98e-01 98.0% 95.8%
3252454 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.54 36.0 2.78e-01 85.0% 28.6%
4352124 848.1.1.1 ↗ a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.54 43.0 3.25e-01 88.0% 68.6%
3834758 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.53 40.0 3.93e-01 93.0% 72.7%
4974581 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.53 43.0 4.17e-01 100.0% 79.1%
4422273 848.1.1.1 ↗ a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.53 43.0 3.29e-01 88.0% 72.3%
4322579 218.2.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 0.53 45.0 4.21e-01 92.0% 90.2%
5069016 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.53 43.0 4.05e-01 88.0% 74.2%
3871410 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 42.0 2.90e-01 85.0% 25.4%
3261163 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.82e-01 100.0% 68.7%
3365830 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.53 42.0 3.48e-01 98.0% 47.0%
85695 848.1.1.0 ↗ a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain 0.52 42.0 3.23e-01 87.0% 73.0%
3589587 886.1.1.2 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.52 34.0 2.74e-01 84.0% 32.5%
5035567 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 34.0 3.90e-01 84.0% 94.2%
3710176 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 46.0 3.15e-01 96.0% 64.7%
5049074 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.52 42.0 3.80e-01 87.0% 73.9%
3491695 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 47.0 4.01e-01 100.0% 85.0%
4163084 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 46.0 4.45e-01 100.0% 99.1%
4323756 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.51 42.0 3.84e-01 89.0% 99.3%
3622298 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.51 45.0 3.25e-01 98.0% 98.3%
3691930 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 32.0 3.55e-01 84.0% 80.8%
4997452 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 46.0 4.24e-01 100.0% 100.0%
4970968 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.50 41.0 3.97e-01 88.0% 77.9%
3789126 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 46.0 3.04e-01 100.0% 31.6%
4330292 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.50 42.0 3.87e-01 91.0% 86.9%