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NC_048709.1__YP_009838313.1__HWB64_gp098__00098

Bact-Vir

NC_048709.1__YP_009838313.1__HWB64_gp098__00098

Identity

Accession:
NC_048709 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-88
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.73 53.0 4.54e-01 75.6% 98.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 52.0 4.44e-01 76.7% 97.0%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 50.0 4.43e-01 74.4% 100.0%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 49.0 4.32e-01 75.6% 98.4%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.66 59.0 5.44e-01 100.0% 93.6%
2wuqB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.65 47.0 3.32e-01 76.7% 60.4%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.65 58.0 5.42e-01 100.0% 81.9%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.64 45.0 3.86e-01 74.4% 78.8%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.64 57.0 5.32e-01 100.0% 78.9%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.64 56.0 4.03e-01 98.8% 73.3%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.64 58.0 5.01e-01 100.0% 86.9%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 56.0 5.01e-01 100.0% 88.6%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 56.0 4.95e-01 100.0% 88.4%
1celA00 2.70.100.10 Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain 0.63 44.0 2.79e-01 73.3% 63.5%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 56.0 4.90e-01 100.0% 85.9%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 50.0 4.51e-01 89.5% 80.7%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 42.0 2.74e-01 72.1% 36.4%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 44.0 3.53e-01 79.1% 46.7%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 4.11e-01 91.9% 93.1%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.15e-01 89.5% 70.7%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 52.0 3.97e-01 97.7% 62.2%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 50.0 4.30e-01 98.8% 77.6%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 47.0 3.46e-01 87.2% 94.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 44.0 3.89e-01 93.0% 56.7%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.58 39.0 3.95e-01 74.4% 69.3%
2n93A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 49.0 4.30e-01 97.7% 63.1%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.57 51.0 4.80e-01 100.0% 89.5%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 3.29e-01 97.7% 79.5%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 3.89e-01 91.9% 93.6%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 3.99e-01 91.9% 95.8%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 47.0 3.22e-01 97.7% 89.6%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 42.0 4.58e-01 91.9% 100.0%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 43.0 2.99e-01 84.9% 55.0%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.28e-01 97.7% 86.0%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.91e-01 90.7% 31.4%
4bbwA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 43.0 2.93e-01 90.7% 40.1%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.54 38.0 3.78e-01 75.6% 71.1%
3rf9B02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 38.0 2.66e-01 75.6% 93.4%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 37.0 3.93e-01 74.4% 89.3%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.50e-01 93.0% 66.1%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.95e-01 96.5% 66.8%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.51 39.0 3.38e-01 84.9% 79.0%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.18e-01 89.5% 47.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 37.0 3.82e-01 77.9% 83.7%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3415592 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.80 73.0 6.00e-01 100.0% 86.7%
4929392 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.76 52.0 5.16e-01 96.5% 67.8%
826 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.73 53.0 4.54e-01 75.6% 98.5%
3814058 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.72 65.0 5.67e-01 100.0% 86.9%
3892482 883.1.1.10 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_C2CD2L 0.72 50.0 3.73e-01 72.1% 80.5%
3743289 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.71 64.0 6.00e-01 100.0% 94.3%
4028916 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.71 64.0 5.88e-01 100.0% 82.7%
3737835 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.71 64.0 6.11e-01 100.0% 94.0%
4578621 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.69 56.0 4.10e-01 86.0% 39.1%
3256023 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.68 50.0 4.25e-01 76.7% 53.3%
3979195 274.1.1.35 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 0.66 47.0 4.12e-01 90.7% 50.4%
4515677 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.66 58.0 5.37e-01 100.0% 77.2%
3635669 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.65 57.0 5.17e-01 96.5% 96.5%
3494647 4099.1.1.20 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.65 50.0 5.21e-01 88.4% 88.7%
223484 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.65 58.0 5.42e-01 100.0% 81.9%
4427813 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.64 56.0 5.29e-01 100.0% 80.0%
3830081 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.64 48.0 3.23e-01 79.1% 38.8%
3970136 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.64 57.0 5.35e-01 100.0% 83.8%
3727451 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.64 56.0 5.45e-01 98.8% 96.8%
3240324 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.64 47.0 3.70e-01 79.1% 38.3%
3805158 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.64 52.0 4.93e-01 89.5% 88.6%
4479376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.64 56.0 5.16e-01 100.0% 76.5%
5039064 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 49.0 3.16e-01 81.4% 31.7%
4218376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.63 54.0 5.23e-01 100.0% 85.0%
1018784 241.1.1.3 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.63 56.0 4.90e-01 100.0% 85.9%
3965099 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.62 55.0 5.18e-01 100.0% 81.9%
4944335 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 46.0 4.55e-01 91.9% 73.1%
3210421 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.62 48.0 3.89e-01 81.4% 79.4%
4638995 71.1.1.15 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 0.62 46.0 3.57e-01 79.1% 86.6%
4406935 4099.1.1.19 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM8 0.62 52.0 4.10e-01 91.9% 69.1%
3253856 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 54.0 4.80e-01 100.0% 75.2%
3192378 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.61 50.0 4.70e-01 91.9% 100.0%
4120507 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.61 44.0 4.32e-01 89.5% 69.5%
3211832 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 47.0 3.28e-01 84.9% 29.4%
3710689 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.60 50.0 4.78e-01 90.7% 80.0%
4034521 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.60 42.0 4.04e-01 73.3% 69.0%
4288802 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.60 45.0 3.71e-01 80.2% 83.2%
1249950 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.59 46.0 4.70e-01 82.6% 100.0%
3709361 3523.1.1.4 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › MORN 0.59 41.0 3.75e-01 82.6% 53.9%
3231961 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 4.02e-01 72.1% 85.3%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.59 45.0 3.90e-01 81.4% 96.3%
5049624 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.59 51.0 5.01e-01 100.0% 96.8%
3597404 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.59 40.0 2.91e-01 81.4% 26.7%
3587052 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.59 48.0 4.69e-01 96.5% 81.1%
3782222 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.38e-01 73.3% 46.5%
1153941 243.4.1.2 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbG_N 0.58 38.0 3.70e-01 91.9% 59.4%
3743890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.43e-01 73.3% 50.3%
3643296 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.58 42.0 3.74e-01 81.4% 54.2%
3552037 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 48.0 4.34e-01 89.5% 99.1%
3606666 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.58 39.0 3.43e-01 82.6% 46.2%
3479225 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.58 46.0 4.39e-01 87.2% 100.0%
3927135 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.58 47.0 3.18e-01 88.4% 76.2%
3597025 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.57 47.0 4.46e-01 89.5% 74.3%
5024450 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 49.0 4.29e-01 98.8% 73.3%
3311784 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.56 38.0 3.37e-01 82.6% 48.0%
3404272 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 48.0 3.89e-01 93.0% 71.9%
5052931 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.16e-01 97.7% 95.7%
3462092 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.55 38.0 3.67e-01 82.6% 62.0%
4356997 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.55 47.0 3.41e-01 100.0% 93.7%
3526347 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.53 45.0 3.21e-01 91.9% 54.8%
4681334 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.53 44.0 3.23e-01 94.2% 71.8%
3601903 77.2.1.0 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.53 40.0 3.27e-01 81.4% 51.2%
3856697 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.52 40.0 3.78e-01 81.4% 78.1%
3890448 77.3.1.3 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.52 43.0 3.84e-01 89.5% 73.3%
4363805 292.2.1.9 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_4 0.52 41.0 4.06e-01 90.7% 83.3%
2905297 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.52 41.0 3.23e-01 89.5% 53.5%
136649 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.52 40.0 3.96e-01 98.8% 77.9%
3596180 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 46.0 4.32e-01 100.0% 91.4%
3975425 3844.1.1.1 a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.50 43.0 3.99e-01 90.7% 74.3%
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.50 32.0 3.35e-01 91.9% 72.0%
3718320 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.50 40.0 2.74e-01 84.9% 27.3%