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NC_048709.1__YP_009838325.1__HWB64_gp110__00110

Bact-Vir

NC_048709.1__YP_009838325.1__HWB64_gp110__00110

Identity

Accession:
NC_048709 ↗
Kingdom:
phage

Quality

49.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Campanilevirus› Vibrio_phage_YC

TaxID: 2267403

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 133-209
PDB
Domain cluster: rep: OX241562.1__CAH9016748.1__VP150E351_P0104__00104__D56-118
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.64 49.0 3.74e-01 83.1% 97.8%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 34.0 4.26e-01 90.9% 100.0%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 48.0 3.46e-01 89.6% 90.5%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 4.32e-01 74.0% 87.9%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.55 48.0 4.36e-01 100.0% 86.8%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 43.0 3.79e-01 94.8% 55.4%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.54 44.0 2.76e-01 94.8% 38.6%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.62e-01 100.0% 73.2%
1wduB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 44.0 3.18e-01 90.9% 78.5%
1oygA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.73e-01 92.2% 30.9%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.53 35.0 2.86e-01 84.4% 36.6%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.64e-01 100.0% 63.7%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.53e-01 100.0% 71.2%
1vw4F01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 42.0 3.99e-01 90.9% 86.0%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.66e-01 100.0% 88.3%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052666 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.61 46.0 4.32e-01 100.0% 64.9%
3593768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.06e-01 100.0% 62.1%
3463266 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.58 38.0 4.15e-01 87.0% 85.0%
3841251 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.58 36.0 4.27e-01 76.6% 98.0%
5077846 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.55 36.0 3.65e-01 100.0% 68.0%
4983255 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.54 35.0 3.56e-01 100.0% 66.7%
3501555 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.53 29.0 3.42e-01 89.6% 76.4%
4932541 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.53 34.0 3.55e-01 100.0% 69.9%
3432730 5.1.4.277 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.51 41.0 2.71e-01 89.6% 27.8%
D2 medium residues 1-121
PDB