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NC_048709.1__YP_009838371.1__HWB64_gp156__00156

Bact-Vir

NC_048709.1__YP_009838371.1__HWB64_gp156__00156

Identity

Accession:
NC_048709 ↗
Kingdom:
phage

Quality

72.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Campanilevirus› Vibrio_phage_YC

TaxID: 2267403

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-196
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00352__D40-229
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16724.12 best T4-gp15_tss 113.9 9.80e-33 100.0% 82.9%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.79 55.0 6.52e-01 85.9% 100.0%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.77 74.0 7.01e-01 99.5% 90.5%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.76 54.0 6.26e-01 89.2% 97.8%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.76 48.0 5.95e-01 93.0% 98.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.74 40.0 5.31e-01 85.4% 97.0%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.72 48.0 5.71e-01 85.9% 98.4%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.68 39.0 4.79e-01 87.6% 89.4%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 30.0 4.09e-01 71.9% 83.3%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.66 34.0 4.40e-01 78.4% 86.0%
3m86A00 2.60.40.2020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 29.0 3.71e-01 91.9% 69.4%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.63 30.0 4.02e-01 71.9% 86.2%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 29.0 3.93e-01 74.1% 85.4%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 40.0 4.60e-01 92.4% 93.4%
5k8mA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 32.0 3.80e-01 78.9% 75.6%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 30.0 3.61e-01 84.9% 75.8%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.56 33.0 3.67e-01 83.2% 70.4%
4f8lA00 2.60.40.3590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 32.0 3.68e-01 74.1% 76.8%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.55 28.0 3.82e-01 82.2% 95.7%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 26.0 3.80e-01 78.4% 100.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 21.0 3.22e-01 96.8% 91.7%
4uxuA00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 42.0 4.02e-01 86.5% 80.5%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 37.0 3.60e-01 88.1% 67.0%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.51 44.0 3.61e-01 95.1% 69.4%
4eaeA00 2.60.40.4170 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 3.69e-01 97.8% 73.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888780 304.124.1.5 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss 0.87 77.0 6.97e-01 90.8% 84.2%
5004177 304.124.1.3 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.83 55.0 6.71e-01 85.9% 100.0%
3585212 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.77 68.0 6.44e-01 92.4% 94.4%
5040945 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.74 57.0 6.35e-01 93.0% 98.0%
3589225 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.72 52.0 6.03e-01 94.1% 100.0%
5003262 304.124.1.10 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Pvc16_N 0.67 56.0 5.91e-01 88.1% 100.0%
4397160 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.67 35.0 4.27e-01 85.9% 76.0%
4136515 310.3.1.23 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 0.65 44.0 4.70e-01 86.5% 78.8%
3427288 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 35.0 4.22e-01 73.5% 81.7%
3523342 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.62 37.0 3.77e-01 75.7% 59.4%
3944239 1.1.13.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.61 35.0 4.45e-01 83.2% 97.1%
3280463 3513.1.1.0 ↗ a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA 0.57 40.0 4.63e-01 87.0% 97.8%
3966825 1.1.13.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.57 36.0 4.43e-01 82.7% 98.3%
4034209 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.54 38.0 4.43e-01 84.9% 99.3%
4029744 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 37.0 4.11e-01 71.9% 88.3%
3967199 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 30.0 3.91e-01 93.0% 96.2%
3605491 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.53 29.0 3.53e-01 94.1% 80.8%
3980535 1.1.13.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.53 37.0 4.32e-01 94.1% 99.3%
3993144 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.53 36.0 3.86e-01 85.4% 78.8%
4941197 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 31.0 3.31e-01 87.0% 64.4%
4257969 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 27.0 3.22e-01 75.1% 71.3%
4140243 1.1.5.82 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 0.52 31.0 3.84e-01 93.0% 95.7%
3754570 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 42.0 3.93e-01 87.6% 77.8%
3797546 11.12.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.51 42.0 4.01e-01 87.0% 81.9%
4663897 12.1.1.43 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 0.51 33.0 3.97e-01 98.4% 100.0%
3898743 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 42.0 3.98e-01 87.0% 79.1%
5012991 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.51 31.0 3.80e-01 93.5% 95.0%
5043613 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.50 31.0 3.69e-01 93.5% 90.4%
4202541 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.50 29.0 3.64e-01 92.4% 92.2%
3245167 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.50 41.0 3.90e-01 87.6% 83.2%