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NC_048709.1__YP_009838394.1__HWB64_gp179__00179
Bact-VirNC_048709.1__YP_009838394.1__HWB64_gp179__00179
Identity
- Accession:
- NC_048709 ↗
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Campanilevirus›
Vibrio_phage_YC
TaxID: 2267403
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-77
Domain cluster:
rep: JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00272__D2-74
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vdrA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.71 | 48.0 | 3.67e-01 | 100.0% | 32.5% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 55.0 | 5.19e-01 | 100.0% | 70.1% |
| 2esrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.70 | 45.0 | 3.45e-01 | 100.0% | 30.6% |
| 7vkkB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 47.0 | 3.26e-01 | 100.0% | 22.9% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 39.0 | 3.71e-01 | 87.8% | 51.7% |
| 3grzB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 44.0 | 3.26e-01 | 100.0% | 27.5% |
| 2nxcA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 44.0 | 3.48e-01 | 100.0% | 34.6% |
| 7ovuA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 46.0 | 3.36e-01 | 100.0% | 29.0% |
| 1jg5A00 | 3.30.1410.10 | Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP | 0.62 | 49.0 | 4.74e-01 | 85.1% | 98.8% |
| 4iscA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 43.0 | 3.42e-01 | 100.0% | 34.6% |
| 1u6mA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 44.0 | 3.31e-01 | 100.0% | 30.2% |
| 4dxkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 47.0 | 4.02e-01 | 87.8% | 97.6% |
| 1vi7A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 35.0 | 3.57e-01 | 89.2% | 60.6% |
| 3hz7A00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.58 | 40.0 | 4.10e-01 | 100.0% | 74.0% |
| 1zkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 41.0 | 3.22e-01 | 100.0% | 33.1% |
| 1x19A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 42.0 | 3.30e-01 | 100.0% | 36.3% |
| 3juwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 41.0 | 3.21e-01 | 100.0% | 34.7% |
| 1cwvA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 3.68e-01 | 97.3% | 56.9% |
| 2nwaA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.55 | 39.0 | 3.89e-01 | 90.5% | 72.0% |
| 4pwuC00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 36.0 | 3.53e-01 | 85.1% | 64.1% |
| 2cxiA01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.54 | 36.0 | 3.53e-01 | 85.1% | 63.3% |
| 2dt9A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 35.0 | 3.56e-01 | 83.8% | 67.6% |
| 3kgyA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.53 | 41.0 | 3.03e-01 | 85.1% | 96.8% |
| 2g6vA02 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.53 | 42.0 | 3.12e-01 | 89.2% | 95.0% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 37.0 | 3.71e-01 | 100.0% | 72.0% |
| 3fzgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 37.0 | 2.75e-01 | 71.6% | 86.2% |
| 3fxzA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 36.0 | 3.30e-01 | 85.1% | 54.1% |
| 1h7sA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 44.0 | 3.40e-01 | 100.0% | 88.6% |
| 3zduA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 32.0 | 3.24e-01 | 85.1% | 61.8% |
| 2bkkA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 39.0 | 3.61e-01 | 90.5% | 65.6% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.47e-01 | 78.4% | 67.4% |
| 2qmiA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.58e-01 | 86.5% | 89.9% |
| 4kzsA01 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.50 | 41.0 | 4.11e-01 | 89.2% | 98.7% |
| 2bujB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 34.0 | 3.17e-01 | 85.1% | 56.4% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3644664 | 256.1.1.7 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF7477 | 0.74 | 41.0 | 5.26e-01 | 90.5% | 93.2% |
| 4986894 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.67 | 40.0 | 4.40e-01 | 86.5% | 73.3% |
| 4460221 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.67 | 41.0 | 3.88e-01 | 89.2% | 52.9% |
| 4107133 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.67 | 40.0 | 4.06e-01 | 87.8% | 60.0% |
| 3674308 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.66 | 40.0 | 3.64e-01 | 89.2% | 45.9% |
| 4321513 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.66 | 40.0 | 3.48e-01 | 89.2% | 40.9% |
| 5062515 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.65 | 48.0 | 3.91e-01 | 100.0% | 42.2% |
| 3284645 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.65 | 50.0 | 3.84e-01 | 100.0% | 37.5% |
| 4347812 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.65 | 39.0 | 3.98e-01 | 89.2% | 60.0% |
| 5073129 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.65 | 45.0 | 4.49e-01 | 100.0% | 70.7% |
| 3649616 | 2003.1.5.115 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 | 0.65 | 44.0 | 2.92e-01 | 100.0% | 17.6% |
| 3970617 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.65 | 45.0 | 4.48e-01 | 100.0% | 70.7% |
| None | — | 0.65 | 45.0 | 3.22e-01 | 100.0% | 25.2% | |
| None | — | 0.65 | 44.0 | 3.13e-01 | 100.0% | 23.6% | |
| None | — | 0.64 | 44.0 | 3.23e-01 | 100.0% | 25.9% | |
| None | — | 0.64 | 44.0 | 3.20e-01 | 100.0% | 25.9% | |
| 4529316 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.64 | 44.0 | 3.12e-01 | 100.0% | 23.6% |
| None | — | 0.64 | 43.0 | 3.19e-01 | 98.6% | 26.7% | |
| 4189964 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.64 | 44.0 | 3.23e-01 | 100.0% | 27.2% |
| 4580031 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.64 | 44.0 | 3.18e-01 | 100.0% | 25.4% |
| 4023978 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.64 | 39.0 | 3.67e-01 | 89.2% | 49.5% |
| 4575490 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.64 | 44.0 | 3.10e-01 | 100.0% | 22.5% |
| 4493041 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.64 | 43.0 | 3.09e-01 | 98.6% | 23.6% |
| 4936721 | 304.24.1.37 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C | 0.63 | 37.0 | 3.97e-01 | 89.2% | 66.2% |
| 2791256 | 306.5.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP › GFRP | 0.63 | 52.0 | 4.93e-01 | 89.2% | 97.7% |
| 4681241 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.63 | 42.0 | 2.88e-01 | 100.0% | 18.9% |
| 5064867 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.63 | 47.0 | 3.45e-01 | 97.3% | 31.4% |
| None | — | 0.63 | 43.0 | 3.16e-01 | 98.6% | 26.7% | |
| 4161632 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.62 | 43.0 | 3.17e-01 | 100.0% | 27.2% |
| 5012030 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.62 | 42.0 | 4.31e-01 | 98.6% | 72.9% |
| 4981848 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.62 | 43.0 | 4.36e-01 | 100.0% | 72.6% |
| None | — | 0.62 | 42.0 | 3.12e-01 | 100.0% | 27.6% | |
| 4932631 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.62 | 38.0 | 3.41e-01 | 89.2% | 43.7% |
| None | — | 0.62 | 41.0 | 3.09e-01 | 98.6% | 27.0% | |
| 5030922 | 304.24.1.37 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C | 0.61 | 37.0 | 3.93e-01 | 89.2% | 67.7% |
| 4987072 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.61 | 42.0 | 4.15e-01 | 100.0% | 67.1% |
| 4494220 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.61 | 41.0 | 2.92e-01 | 100.0% | 23.2% |
| 4992248 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.61 | 42.0 | 4.33e-01 | 100.0% | 75.7% |
| 3992668 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.60 | 45.0 | 3.23e-01 | 100.0% | 28.3% |
| 5075325 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.60 | 42.0 | 3.19e-01 | 100.0% | 30.9% |
| 5024972 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.60 | 43.0 | 4.23e-01 | 100.0% | 70.0% |
| 5010930 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.59 | 42.0 | 4.13e-01 | 100.0% | 70.0% |
| 3869511 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.58 | 51.0 | 4.74e-01 | 100.0% | 80.0% |
| 4981769 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.58 | 38.0 | 3.77e-01 | 95.9% | 62.5% |
| 4945580 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.58 | 41.0 | 4.01e-01 | 100.0% | 68.4% |
| 4335572 | 2003.1.5.122 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF3052 | 0.58 | 44.0 | 3.73e-01 | 100.0% | 48.8% |
| 3441759 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 40.0 | 3.98e-01 | 75.7% | 96.2% |
| 5074009 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.54 | 45.0 | 3.37e-01 | 100.0% | 35.4% |
| 4999706 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.54 | 46.0 | 3.18e-01 | 100.0% | 28.7% |
| 5008016 | 2003.1.5.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 | 0.53 | 48.0 | 3.24e-01 | 100.0% | 31.1% |
| 4998240 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 47.0 | 3.54e-01 | 100.0% | 42.4% |
| 5022274 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 46.0 | 3.39e-01 | 100.0% | 36.1% |
| 4949895 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.52 | 47.0 | 3.50e-01 | 100.0% | 42.7% |
| 4929225 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.52 | 35.0 | 2.77e-01 | 85.1% | 34.7% |
| 3701144 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.52 | 42.0 | 3.91e-01 | 86.5% | 72.2% |
| 5002526 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 46.0 | 3.54e-01 | 100.0% | 54.7% |
| 4961647 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.51 | 44.0 | 3.24e-01 | 100.0% | 35.5% |
| 3610037 | 319.1.1.9 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DPCD | 0.51 | 36.0 | 3.25e-01 | 75.7% | 62.7% |
| 3967106 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 43.0 | 3.10e-01 | 100.0% | 40.0% |