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NC_048712.1__YP_009838558.1__HWB67_gp19__00019

Bact-Vir

NC_048712.1__YP_009838558.1__HWB67_gp19__00019

Identity

Accession:
NC_048712 ↗
Kingdom:
phage

Quality

71.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Guelinviridae› Susfortunavirus› Clostridium_phage_susfortuna

TaxID: 2316154

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-95
PDB
D2 high residues 99-195_331-337
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20934.4 best phi29_gp9_C 75.7 6.40e-21 93.3% 34.5%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 31.0 3.31e-01 93.3% 54.7%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 3.88e-01 100.0% 76.2%
1r6vA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 34.0 3.34e-01 100.0% 53.6%
1cfbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.82e-01 100.0% 67.9%
2j73A00 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 3.62e-01 100.0% 64.1%
6kcvA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.83e-01 99.0% 61.2%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 31.0 3.43e-01 92.3% 66.7%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 3.34e-01 96.2% 66.3%
6i6rB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.69e-01 100.0% 71.7%
1v05A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 31.0 3.28e-01 100.0% 63.5%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.66e-01 99.0% 73.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.57e-01 96.2% 89.4%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 42.0 4.28e-01 93.3% 93.9%
3r87A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 42.0 3.93e-01 93.3% 90.2%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.74e-01 98.1% 61.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2989726 3367.1.1.1 ↗ beta complex topology › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › phi29_gp9_C 0.73 66.0 4.25e-01 100.0% 47.1%
1117749 3367.1.1.1 ↗ beta complex topology › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › phi29_gp9_C 0.71 65.0 4.38e-01 100.0% 34.4%
1118267 3367.1.1.1 ↗ beta complex topology › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › phi29_gp9_C 0.70 60.0 4.39e-01 93.3% 36.0%
3969722 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.66 30.0 3.60e-01 91.3% 61.4%
5028185 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 4.39e-01 100.0% 78.8%
3273362 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 38.0 4.15e-01 100.0% 71.8%
4302927 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.62 41.0 4.18e-01 90.4% 70.0%
4124694 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 38.0 3.83e-01 100.0% 64.8%
157624 4.1.1.47 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin6 0.54 31.0 3.34e-01 96.2% 66.3%
3906455 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 25.0 3.16e-01 71.2% 75.0%
5045701 221.1.3.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.52 44.0 4.06e-01 100.0% 70.4%
4009943 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 34.0 3.26e-01 96.2% 56.0%
3718060 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.81e-01 98.1% 72.2%
3588182 9.16.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.51 29.0 2.93e-01 81.7% 53.3%
149002 222.1.1.8 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.50 42.0 3.93e-01 93.3% 90.2%
D3 high residues 345-405
PDB
Domain cluster: rep: OR947472.1__WQZ40878.1__X__00010__D1-58
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20934.4 best phi29_gp9_C 92.6 4.70e-26 100.0% 20.7%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ww3A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 45.0 3.12e-01 100.0% 48.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1117749 3367.1.1.1 ↗ beta complex topology › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › phi29_gp9_C 0.82 73.0 4.40e-01 100.0% 16.1%
D4 medium residues 200-242_272-316
PDB