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NC_048716.1__YP_009838796.1__HWB72_gp25__00025

Bact-Vir

NC_048716.1__YP_009838796.1__HWB72_gp25__00025

Identity

Accession:
NC_048716 ↗
Kingdom:
phage

Quality

96.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-70
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.77 59.0 4.74e-01 83.6% 76.9%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.71 53.0 3.32e-01 81.8% 22.1%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.70 41.0 4.70e-01 78.2% 82.1%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.67 47.0 3.57e-01 74.5% 45.7%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.66 51.0 4.51e-01 87.3% 90.5%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.64 56.0 4.81e-01 100.0% 83.1%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.64 55.0 4.56e-01 98.2% 77.5%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.64 50.0 3.78e-01 87.3% 34.8%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.63 49.0 3.05e-01 83.6% 29.1%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 46.0 4.50e-01 80.0% 90.3%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 53.0 4.12e-01 100.0% 93.1%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 48.0 3.03e-01 85.5% 15.5%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.62 52.0 4.07e-01 100.0% 43.2%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 52.0 4.00e-01 100.0% 94.2%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 49.0 3.13e-01 85.5% 17.5%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.61 53.0 4.34e-01 100.0% 85.6%
3lm2A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 50.0 4.22e-01 94.5% 94.8%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 45.0 4.36e-01 80.0% 80.6%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.61 51.0 4.00e-01 96.4% 86.8%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.61 49.0 3.47e-01 94.5% 62.6%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 48.0 3.02e-01 90.9% 49.7%
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 53.0 3.85e-01 100.0% 69.9%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.59 49.0 2.95e-01 100.0% 22.1%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.03e-01 94.5% 25.7%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 4.00e-01 92.7% 96.6%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.05e-01 100.0% 31.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 48.0 3.07e-01 100.0% 30.8%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.56 47.0 3.42e-01 100.0% 68.8%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 46.0 3.82e-01 98.2% 64.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 42.0 3.98e-01 90.9% 71.0%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 32.0 2.67e-01 80.0% 31.7%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.55 45.0 3.86e-01 98.2% 82.8%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 47.0 3.05e-01 100.0% 84.5%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 44.0 2.89e-01 90.9% 38.7%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.50e-01 70.9% 63.9%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.84e-01 85.5% 92.2%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 37.0 3.38e-01 80.0% 84.7%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 43.0 3.83e-01 94.5% 75.6%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 3.77e-01 100.0% 72.9%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 45.0 3.21e-01 100.0% 74.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 4.27e-01 98.2% 100.0%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 40.0 3.38e-01 98.2% 75.2%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 44.0 4.01e-01 98.2% 85.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 45.0 4.45e-01 98.2% 91.5%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591534 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.70 55.0 4.19e-01 85.5% 37.6%
5079258 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.69 52.0 5.59e-01 90.9% 100.0%
3984091 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.68 54.0 4.33e-01 98.2% 44.8%
3385818 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 48.0 3.02e-01 74.5% 26.7%
5002449 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.55e-01 100.0% 70.9%
3222216 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.67 52.0 4.87e-01 87.3% 77.1%
5056706 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.80e-01 100.0% 80.0%
5059089 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 54.0 3.38e-01 90.9% 24.0%
5013467 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 55.0 3.53e-01 100.0% 49.4%
5001101 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.65 51.0 4.96e-01 85.5% 80.0%
3219544 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 58.0 3.59e-01 100.0% 18.4%
3995797 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.65 46.0 4.38e-01 74.5% 86.2%
3903931 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.65 56.0 3.48e-01 98.2% 32.0%
4966534 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.58e-01 100.0% 78.0%
4930179 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.60e-01 100.0% 74.5%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 56.0 3.62e-01 100.0% 21.2%
5047657 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 49.0 4.99e-01 85.5% 98.2%
3212555 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.64 55.0 4.15e-01 100.0% 40.8%
4950402 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.63 48.0 3.76e-01 85.5% 37.7%
4987649 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.63 51.0 3.43e-01 92.7% 41.7%
3264341 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.63 54.0 3.38e-01 100.0% 29.5%
3225057 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 55.0 3.77e-01 100.0% 29.2%
3935357 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.18e-01 98.2% 58.3%
5020831 881.4.1.2 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.62 48.0 3.72e-01 85.5% 38.4%
3229102 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 51.0 3.39e-01 100.0% 21.2%
None 0.62 51.0 3.09e-01 98.2% 31.3%
3484776 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 40.0 3.12e-01 70.9% 30.8%
3235669 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 54.0 4.12e-01 100.0% 43.2%
3211176 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 52.0 3.39e-01 100.0% 21.2%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 44.0 4.61e-01 80.0% 98.0%
3870514 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 52.0 4.12e-01 96.4% 58.3%
4938404 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 40.0 4.10e-01 100.0% 69.1%
3225229 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 51.0 3.34e-01 100.0% 21.2%
4977715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 4.13e-01 98.2% 61.7%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 50.0 3.32e-01 100.0% 21.2%
5015133 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.60 42.0 4.15e-01 76.4% 70.0%
3609378 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 50.0 4.28e-01 96.4% 75.8%
3338958 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 42.0 2.77e-01 78.2% 26.5%
3242542 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 50.0 3.32e-01 100.0% 22.4%
3239249 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 50.0 3.27e-01 100.0% 21.2%
3404467 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.59 42.0 3.07e-01 96.4% 24.9%
4957409 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 40.0 4.15e-01 100.0% 78.0%
3228574 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 49.0 3.25e-01 100.0% 21.3%
3227136 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 50.0 3.44e-01 100.0% 27.1%
5083781 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 51.0 3.63e-01 100.0% 54.1%
3820070 5.1.2.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_1 0.58 49.0 3.36e-01 100.0% 42.7%
4932814 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 37.0 4.23e-01 72.7% 100.0%
4955965 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.58 38.0 3.93e-01 87.3% 74.0%
4982334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.13e-01 98.2% 76.4%
3459291 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.57 48.0 3.05e-01 100.0% 28.0%
3962065 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 47.0 3.00e-01 92.7% 34.8%
5044272 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 38.0 3.94e-01 85.5% 78.0%
2391944 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.55 45.0 3.94e-01 94.5% 93.2%
4989647 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.55 38.0 3.88e-01 87.3% 72.7%
3627280 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.55 42.0 3.95e-01 92.7% 85.3%
3827590 2007.5.1.20 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase,PMR5N 0.54 40.0 2.49e-01 80.0% 91.3%
3704121 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.54 36.0 3.61e-01 85.5% 67.2%
None 0.51 34.0 2.21e-01 70.9% 13.1%
4000403 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.51 38.0 3.95e-01 100.0% 92.0%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.51 42.0 2.47e-01 94.5% 38.8%
4242957 2003.1.10.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.50 43.0 3.12e-01 96.4% 36.3%