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NC_048716.1__YP_009838825.1__HWB72_gp54__00054
Bact-VirNC_048716.1__YP_009838825.1__HWB72_gp54__00054
Identity
- Accession:
- NC_048716 ↗
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Taxonomy
TaxID: 2249778
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-92
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nzrM03 | 3.30.110.180 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.69 | 52.0 | 4.47e-01 | 93.8% | 52.0% |
| 4cllA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.67 | 53.0 | 3.93e-01 | 86.4% | 95.7% |
| 5optY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 47.0 | 4.14e-01 | 85.2% | 61.8% |
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 47.0 | 3.92e-01 | 85.2% | 50.0% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.60 | 43.0 | 3.36e-01 | 75.3% | 60.2% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 42.0 | 4.10e-01 | 72.8% | 88.5% |
| 2v94B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 46.0 | 4.47e-01 | 87.7% | 78.5% |
| 3mwbB03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 41.0 | 3.92e-01 | 76.5% | 89.5% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.56 | 42.0 | 4.06e-01 | 80.2% | 91.6% |
| 1j6wA00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.56 | 50.0 | 3.98e-01 | 100.0% | 62.1% |
| 3i9fB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 38.0 | 3.04e-01 | 71.6% | 34.9% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.56 | 37.0 | 3.62e-01 | 70.4% | 62.5% |
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 4.07e-01 | 87.7% | 68.6% |
| 2lxrA00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.55 | 33.0 | 3.44e-01 | 72.8% | 61.8% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.55 | 36.0 | 3.63e-01 | 72.8% | 65.9% |
| 3b82A06 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 3.30e-01 | 71.6% | 62.8% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.54 | 40.0 | 3.63e-01 | 90.1% | 57.8% |
| 2ia0B02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.54 | 38.0 | 3.55e-01 | 72.8% | 89.9% |
| 5suhA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.54 | 41.0 | 3.81e-01 | 82.7% | 98.1% |
| 1kzfA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 48.0 | 3.61e-01 | 100.0% | 50.5% |
| 3so6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 46.0 | 3.95e-01 | 98.8% | 89.1% |
| 2iruA02 | 3.30.70.3300 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 48.0 | 4.02e-01 | 100.0% | 94.9% |
| 5suhB01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.51 | 36.0 | 3.44e-01 | 75.3% | 93.9% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.51 | 40.0 | 3.34e-01 | 100.0% | 46.5% |
| 4petA01 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.50 | 40.0 | 3.04e-01 | 90.1% | 46.5% |
| 2y7bA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 43.0 | 3.72e-01 | 97.5% | 90.3% |
| 1kvkA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.50 | 43.0 | 3.54e-01 | 97.5% | 52.0% |
| 1kkhA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.50 | 46.0 | 3.86e-01 | 100.0% | 68.7% |
| 2dqlA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 39.0 | 3.55e-01 | 86.4% | 87.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929538 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.66 | 39.0 | 3.92e-01 | 72.8% | 56.5% |
| 4946998 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.62 | 51.0 | 5.00e-01 | 91.4% | 83.3% |
| 3592492 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.61 | 47.0 | 4.12e-01 | 85.2% | 60.8% |
| 3446561 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.58 | 50.0 | 3.48e-01 | 100.0% | 78.1% |
| 4932682 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.58 | 46.0 | 4.06e-01 | 87.7% | 61.7% |
| 3436277 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 49.0 | 3.37e-01 | 100.0% | 79.3% |
| 4949872 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.56 | 42.0 | 3.68e-01 | 82.7% | 71.5% |
| 5052508 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.55 | 38.0 | 3.69e-01 | 72.8% | 64.5% |
| 4162926 | 241.1.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT | 0.55 | 39.0 | 3.39e-01 | 74.1% | 73.8% |
| 3519959 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 35.0 | 3.77e-01 | 72.8% | 80.0% |
| 4008380 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.54 | 39.0 | 3.45e-01 | 76.5% | 70.8% |
| 3724623 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.53 | 48.0 | 2.93e-01 | 100.0% | 19.8% |
| 4995059 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.53 | 42.0 | 2.73e-01 | 85.2% | 74.9% |
| 3515869 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 44.0 | 2.90e-01 | 96.3% | 64.7% |
| 4126306 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.51 | 38.0 | 3.79e-01 | 79.0% | 85.9% |
| 3413287 | 11.1.1.796 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Shg | 0.51 | 46.0 | 3.69e-01 | 98.8% | 85.8% |
| 4946421 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.51 | 42.0 | 2.51e-01 | 93.8% | 60.6% |
| 4963299 | 304.24.1.43 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PF25930 | 0.51 | 37.0 | 3.31e-01 | 80.2% | 66.4% |
| 4257535 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.50 | 36.0 | 3.21e-01 | 74.1% | 93.9% |
| 3285723 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.50 | 46.0 | 3.53e-01 | 100.0% | 82.3% |
| 3289207 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.50 | 46.0 | 2.99e-01 | 100.0% | 46.2% |