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NC_048717.1__YP_009838891.1__HWB73_gp55__00055

Bact-Vir

NC_048717.1__YP_009838891.1__HWB73_gp55__00055

Identity

Accession:
NC_048717 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 48.0 3.72e-01 77.3% 34.1%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 49.0 3.90e-01 71.2% 37.4%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.70 48.0 3.44e-01 71.2% 26.2%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.69 51.0 3.16e-01 78.8% 23.7%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.68 50.0 3.18e-01 78.8% 30.5%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 61.0 3.77e-01 100.0% 36.3%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 50.0 3.15e-01 78.8% 26.7%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.67 52.0 4.26e-01 84.8% 58.4%
2xu7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 46.0 2.87e-01 71.2% 21.7%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.66 38.0 3.19e-01 100.0% 33.3%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.65 46.0 3.24e-01 75.8% 88.5%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 50.0 3.11e-01 83.3% 19.1%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.64 47.0 3.73e-01 78.8% 39.9%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.64 46.0 3.25e-01 77.3% 89.5%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 47.0 3.09e-01 77.3% 37.0%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 55.0 3.45e-01 100.0% 80.3%
2lrsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 46.0 4.54e-01 78.8% 100.0%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.63 45.0 3.19e-01 77.3% 89.3%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 52.0 4.46e-01 97.0% 78.1%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 44.0 3.09e-01 75.8% 90.0%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.61 48.0 4.06e-01 89.4% 81.7%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.61 48.0 4.09e-01 87.9% 85.7%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 50.0 3.16e-01 92.4% 75.1%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 49.0 3.94e-01 93.9% 59.6%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 49.0 3.15e-01 92.4% 79.1%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 44.0 3.31e-01 78.8% 53.2%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.60 38.0 3.29e-01 89.4% 41.7%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 49.0 3.17e-01 92.4% 83.2%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.65e-01 74.2% 52.0%
1zj8A04 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.59 48.0 3.86e-01 97.0% 84.5%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 45.0 3.86e-01 90.9% 86.1%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.58 48.0 2.86e-01 95.5% 17.4%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 44.0 3.06e-01 84.8% 61.2%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.69e-01 83.3% 92.7%
2qkbA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 41.0 3.21e-01 78.8% 42.1%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 47.0 3.82e-01 100.0% 65.9%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 44.0 3.36e-01 89.4% 98.8%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.55 41.0 3.02e-01 80.3% 74.0%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 45.0 2.97e-01 98.5% 39.5%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 41.0 3.38e-01 81.8% 88.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.24e-01 77.3% 42.7%
1na6A01 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 37.0 2.86e-01 74.2% 88.3%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 38.0 3.26e-01 75.8% 54.5%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 36.0 2.90e-01 71.2% 86.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 41.0 4.05e-01 90.9% 94.4%
4i6xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.76e-01 100.0% 95.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.63e-01 74.2% 88.9%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.93e-01 87.9% 79.5%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 40.0 2.62e-01 89.4% 56.8%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032832 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.77 59.0 3.52e-01 80.3% 29.0%
4959306 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.73 54.0 3.39e-01 78.8% 27.8%
3611797 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 57.0 3.51e-01 83.3% 22.8%
5047051 5.1.4.663 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBBP 0.73 54.0 3.31e-01 78.8% 20.0%
3801910 5.1.3.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.73 52.0 3.31e-01 75.8% 25.2%
3596066 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 53.0 4.29e-01 78.8% 44.0%
5054267 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 52.0 3.49e-01 77.3% 32.2%
3508100 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.71 56.0 4.39e-01 86.4% 62.1%
3426652 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.70 54.0 3.46e-01 83.3% 27.1%
3723546 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.69 50.0 3.19e-01 77.3% 25.7%
3708351 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 53.0 3.37e-01 83.3% 24.9%
5077400 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 47.0 4.10e-01 74.2% 49.0%
4106397 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 53.0 5.13e-01 86.4% 88.0%
3241917 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 50.0 3.32e-01 81.8% 19.7%
3435863 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.67 53.0 3.66e-01 84.8% 72.6%
3826506 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 50.0 3.27e-01 80.3% 20.7%
4302400 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.66 54.0 3.20e-01 90.9% 15.2%
3851439 5.1.4.612 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Med16_N, Med16_bridge, Med16_C 0.66 59.0 3.42e-01 100.0% 91.3%
5079397 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 46.0 4.21e-01 71.2% 78.8%
3997433 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.66 58.0 3.88e-01 100.0% 67.9%
3370941 295.1.1.35 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FBA_1 0.66 50.0 3.76e-01 83.3% 55.8%
3734046 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.64 53.0 3.33e-01 92.4% 32.1%
3659202 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.64 43.0 4.09e-01 75.8% 57.5%
3391727 5.1.4.156 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.64 53.0 3.12e-01 90.9% 17.7%
4503569 5.1.7.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.64 48.0 2.86e-01 83.3% 17.7%
3623902 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.63 46.0 3.55e-01 80.3% 35.0%
3275744 206.1.1.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.63 49.0 2.95e-01 83.3% 42.5%
3735711 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.62 51.0 3.41e-01 92.4% 28.2%
4951310 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 52.0 3.25e-01 97.0% 29.2%
3801858 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.62 48.0 4.99e-01 97.0% 95.0%
3214289 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 51.0 4.33e-01 93.9% 89.6%
5018052 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.61 52.0 3.52e-01 93.9% 91.0%
3898471 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.61 46.0 3.46e-01 84.8% 63.2%
3595969 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.61 50.0 4.26e-01 93.9% 75.7%
3380131 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.60 44.0 2.86e-01 78.8% 43.2%
3997515 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.60 52.0 3.54e-01 100.0% 85.9%
3940149 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 45.0 4.15e-01 83.3% 73.3%
3430385 4099.1.1.1 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.60 49.0 4.13e-01 95.5% 77.6%
3797649 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 45.0 3.88e-01 81.8% 50.9%
3940967 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.60 48.0 3.09e-01 89.4% 50.3%
4013876 295.1.1.38 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › NPHP3_N 0.59 42.0 4.21e-01 77.3% 91.4%
3204553 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.59 50.0 3.22e-01 95.5% 83.3%
3168539 109.4.1.69 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IKI3 0.59 46.0 3.10e-01 90.9% 51.1%
4629072 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 46.0 3.58e-01 89.4% 70.6%
4322616 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 44.0 3.08e-01 81.8% 32.6%
5074458 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.58 43.0 3.24e-01 80.3% 98.8%
3687742 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.58 48.0 3.11e-01 92.4% 78.2%
3784846 11.1.1.378 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 0.58 44.0 3.15e-01 83.3% 91.9%
3472961 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 51.0 3.96e-01 100.0% 45.3%
3236367 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 43.0 3.43e-01 81.8% 83.4%
3492699 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 45.0 4.09e-01 86.4% 89.5%
4653627 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.58 44.0 3.38e-01 84.8% 84.8%
3392312 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.57 46.0 3.47e-01 89.4% 38.2%
3574500 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 2.85e-01 92.4% 18.8%
3602029 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.57 46.0 3.45e-01 97.0% 85.6%
3206041 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.56 45.0 2.98e-01 92.4% 95.5%
3932304 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 46.0 3.58e-01 95.5% 44.4%
3553132 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 46.0 2.65e-01 97.0% 35.6%
3835039 330.1.1.3 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.55 41.0 3.52e-01 84.8% 66.7%
3667729 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.55 42.0 2.81e-01 100.0% 20.4%
3880624 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 42.0 3.94e-01 83.3% 100.0%
5037697 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 47.0 3.21e-01 100.0% 76.1%
3992554 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.52 41.0 2.82e-01 90.9% 42.2%
4552605 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 40.0 3.93e-01 95.5% 96.2%
3801624 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 39.0 3.51e-01 87.9% 67.0%
5045102 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 45.0 3.98e-01 98.5% 73.7%