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NC_048718.1__YP_009838929.1__HWB74_gp26__00026
Bact-VirNC_048718.1__YP_009838929.1__HWB74_gp26__00026
Identity
- Accession:
- NC_048718 ↗
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Taxonomy
TaxID: 2249767
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-94
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j5iA02 | 6.10.250.2850 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.79 | 52.0 | 5.97e-01 | 96.4% | 100.0% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 62.0 | 6.26e-01 | 96.4% | 86.0% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 66.0 | 6.82e-01 | 92.9% | 100.0% |
| 1jxzC02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.77 | 54.0 | 5.28e-01 | 100.0% | 68.3% |
| 4di1C02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.76 | 51.0 | 5.66e-01 | 98.2% | 95.1% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.76 | 58.0 | 4.19e-01 | 83.9% | 30.1% |
| 1r4sA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.75 | 59.0 | 3.68e-01 | 85.7% | 17.0% |
| 3v9rB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.74 | 57.0 | 5.26e-01 | 83.9% | 65.3% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.74 | 60.0 | 3.64e-01 | 94.6% | 13.5% |
| 3n2oA04 | 1.10.287.3440 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 51.0 | 5.31e-01 | 73.2% | 80.8% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.73 | 58.0 | 5.35e-01 | 92.9% | 67.5% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.71 | 50.0 | 4.14e-01 | 100.0% | 39.4% |
| 4fzwA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.70 | 49.0 | 4.91e-01 | 80.4% | 72.4% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 52.0 | 5.13e-01 | 82.1% | 81.7% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 56.0 | 4.31e-01 | 100.0% | 38.8% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.68 | 58.0 | 5.01e-01 | 100.0% | 62.1% |
| 4jylA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.67 | 49.0 | 5.20e-01 | 80.4% | 91.8% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 46.0 | 3.64e-01 | 71.4% | 35.7% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 53.0 | 5.14e-01 | 85.7% | 79.0% |
| 1h6vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 53.0 | 3.56e-01 | 92.9% | 49.1% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.66 | 50.0 | 4.37e-01 | 87.5% | 52.8% |
| 2o5iN07 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.66 | 54.0 | 4.42e-01 | 100.0% | 48.3% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.65 | 55.0 | 4.24e-01 | 98.2% | 58.6% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 53.0 | 4.57e-01 | 96.4% | 58.3% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 46.0 | 3.89e-01 | 89.3% | 43.4% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 54.0 | 4.96e-01 | 98.2% | 89.5% |
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.63 | 48.0 | 3.72e-01 | 85.7% | 58.5% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.63 | 50.0 | 4.86e-01 | 92.9% | 80.0% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 49.0 | 4.73e-01 | 87.5% | 76.6% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 53.0 | 3.47e-01 | 92.9% | 22.0% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 48.0 | 3.55e-01 | 91.1% | 30.3% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.61 | 54.0 | 4.82e-01 | 100.0% | 100.0% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.60 | 50.0 | 4.96e-01 | 92.9% | 100.0% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 44.0 | 3.85e-01 | 89.3% | 52.2% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 41.0 | 3.88e-01 | 80.4% | 60.8% |
| 3q18A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 45.0 | 3.66e-01 | 96.4% | 56.0% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 45.0 | 3.57e-01 | 100.0% | 95.8% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973208 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.84 | 71.0 | 6.42e-01 | 100.0% | 69.3% |
| 3643105 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.83 | 73.0 | 5.25e-01 | 98.2% | 35.5% |
| 3506294 | 3281.1.1.0 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related | 0.83 | 62.0 | 6.76e-01 | 100.0% | 100.0% |
| 3621479 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.83 | 67.0 | 5.85e-01 | 89.3% | 60.0% |
| 5017842 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.82 | 73.0 | 6.33e-01 | 100.0% | 67.1% |
| 3317016 | 150.5.1.102 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PF28483 | 0.82 | 73.0 | 6.83e-01 | 100.0% | 97.1% |
| 3229793 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.79 | 69.0 | 6.05e-01 | 100.0% | 65.9% |
| 4946087 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.78 | 64.0 | 4.97e-01 | 100.0% | 41.6% |
| 5054424 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.77 | 65.0 | 5.92e-01 | 100.0% | 71.2% |
| 4958277 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.76 | 67.0 | 4.59e-01 | 100.0% | 28.7% |
| 4267174 | 614.1.1.24 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › GlutR_dimer | 0.76 | 67.0 | 6.09e-01 | 100.0% | 93.3% |
| 4951179 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.75 | 64.0 | 5.40e-01 | 100.0% | 57.0% |
| 4564711 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.75 | 66.0 | 6.02e-01 | 100.0% | 93.3% |
| 4518916 | 4144.1.1.8 ↗ | alpha duplicates or obligate multimers › YejL-like › YejL-like › YejL-like › GlutR_dimer | 0.75 | 66.0 | 6.00e-01 | 100.0% | 93.3% |
| 5058468 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.75 | 63.0 | 5.84e-01 | 100.0% | 77.3% |
| 3643902 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.75 | 65.0 | 5.00e-01 | 100.0% | 46.2% |
| 4346135 | 3921.1.1.0 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D | 0.74 | 63.0 | 4.48e-01 | 100.0% | 32.2% |
| 3402099 | 5043.2.1.5 ↗ | extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › ATP_synt_H | 0.74 | 60.0 | 5.57e-01 | 100.0% | 70.7% |
| 3580117 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.73 | 62.0 | 5.68e-01 | 100.0% | 73.3% |
| 5014971 | 1075.5.1.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 | 0.72 | 61.0 | 4.19e-01 | 100.0% | 27.8% |
| 4453642 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.72 | 62.0 | 4.44e-01 | 100.0% | 82.3% |
| 4086475 | 3755.3.1.466 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CC_BshC | 0.72 | 62.0 | 4.55e-01 | 100.0% | 36.8% |
| 3518379 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.71 | 53.0 | 5.37e-01 | 78.6% | 85.5% |
| 5038736 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.69 | 59.0 | 5.08e-01 | 100.0% | 58.9% |
| 185221 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.69 | 53.0 | 4.99e-01 | 82.1% | 73.1% |
| 4029298 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.69 | 61.0 | 3.92e-01 | 100.0% | 34.2% |
| 3597348 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.69 | 57.0 | 3.67e-01 | 100.0% | 20.3% |
| 2636640 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.65 | 52.0 | 4.72e-01 | 92.9% | 64.9% |
| 3459313 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.64 | 47.0 | 4.08e-01 | 80.4% | 52.2% |
| 4247950 | 4994.1.1.1 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 | 0.63 | 52.0 | 4.46e-01 | 96.4% | 55.8% |
| 5049361 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.63 | 50.0 | 4.51e-01 | 92.9% | 62.5% |
| 3260418 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.62 | 51.0 | 4.94e-01 | 100.0% | 95.4% |
| 5045310 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.59 | 50.0 | 4.64e-01 | 92.9% | 75.7% |
| 3596654 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 47.0 | 3.11e-01 | 100.0% | 87.7% |