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NC_048718.1__YP_009838968.1__HWB74_gp65__00065

Bact-Vir

NC_048718.1__YP_009838968.1__HWB74_gp65__00065

Identity

Accession:
NC_048718 ↗
Kingdom:
phage

Quality

95.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fernvirus› Paenibacillus_phage_Jacopo

TaxID: 2249767

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-87
PDB
Domain cluster: rep: NC_015262.1__YP_004306159.1__phiCD6356_58__00058__D7-89
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.66 46.0 3.04e-01 72.1% 50.6%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 46.0 3.73e-01 84.9% 65.1%
1k8kF00 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 50.0 4.01e-01 98.8% 77.8%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 37.0 2.52e-01 70.9% 49.8%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 38.0 2.70e-01 75.6% 81.6%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 39.0 2.71e-01 80.2% 47.3%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 36.0 3.30e-01 72.1% 77.0%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 38.0 2.81e-01 83.7% 39.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742908 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.70 43.0 4.20e-01 70.9% 55.8%
3935244 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.68 54.0 3.64e-01 84.9% 37.8%
4028487 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 47.0 2.81e-01 100.0% 10.5%
5001282 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 38.0 3.13e-01 70.9% 35.9%
3937930 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.60 41.0 2.69e-01 97.7% 15.9%
4435338 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.57 47.0 3.07e-01 88.4% 77.5%
3592742 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 39.0 3.90e-01 70.9% 74.4%
3991351 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.57 50.0 4.15e-01 95.3% 82.8%
2426538 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 40.0 3.60e-01 79.1% 70.2%
3993098 5.1.5.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.54 41.0 2.52e-01 83.7% 32.3%
3574041 5.1.13.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › Det1 0.53 45.0 2.89e-01 97.7% 42.0%
3374974 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.52 40.0 3.02e-01 83.7% 71.1%
3623154 5.1.4.436 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.52 40.0 2.33e-01 83.7% 21.1%
4940436 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.51 33.0 3.27e-01 83.7% 61.1%
3722450 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 43.0 3.54e-01 88.4% 69.0%
3707456 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 35.0 2.89e-01 79.1% 40.0%
3645259 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.50 38.0 3.46e-01 79.1% 87.3%