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NC_048720.1__YP_009839206.1__HWB76_gp008__00008

Bact-Vir

NC_048720.1__YP_009839206.1__HWB76_gp008__00008

Identity

Accession:
NC_048720 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Annadreamyvirus› Streptomyces_phage_Blueeyedbeauty

TaxID: 2250336

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n0uA03 3.90.1430.10 Alpha Beta › Alpha-Beta Complex › Yeast translation eEF2 (G' domain) › Yeast translation eEF2 (G' domain) 0.56 38.0 3.22e-01 70.3% 46.7%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 40.0 2.56e-01 75.0% 89.0%
2kz6A01 6.10.140.1310 Special › Helix non-globular › Helix Hairpins › 0.55 40.0 3.75e-01 78.1% 93.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3284771 4107.1.1.2 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › zf-CGNR 0.85 57.0 4.12e-01 70.3% 27.5%
3411707 5086.1.1.4 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › CpG_bind_C 0.79 64.0 4.95e-01 100.0% 41.5%
3876103 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.61 47.0 2.97e-01 82.8% 18.8%
3295061 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 46.0 3.77e-01 89.1% 45.0%
3271826 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 44.0 4.66e-01 79.7% 100.0%
3597834 376.1.5.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger › zf-AN1 0.59 43.0 4.38e-01 82.8% 78.5%
3528840 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 38.0 4.02e-01 87.5% 96.0%
3674655 2003.1.9.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.54 40.0 2.32e-01 78.1% 8.8%
D2 high residues 71-142
PDB
Domain cluster: rep: subassembly_31bins_VIRSorter_scaffold_0-circular-cat_2_SIZE_382860bp_prodigal-single.1__X__X__00338__D87-170
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.69 55.0 5.29e-01 97.2% 74.7%
1x6aA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.65 42.0 4.46e-01 93.1% 75.8%
1e7lA01 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.62 50.0 4.91e-01 98.6% 81.2%
4kfzA02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.59 37.0 3.92e-01 90.3% 72.3%
1eluA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 42.0 3.67e-01 81.9% 75.7%
3caiA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 39.0 3.28e-01 80.6% 71.9%
4uqvF02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 40.0 3.29e-01 81.9% 69.0%
7tlrA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 37.0 2.65e-01 77.8% 59.8%
3g9qA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 38.0 2.96e-01 79.2% 93.5%
4da5A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 37.0 3.63e-01 94.4% 71.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966684 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 58.0 6.37e-01 100.0% 93.3%
3952776 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.73 55.0 5.82e-01 93.1% 89.2%
3953059 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.73 55.0 5.15e-01 97.2% 65.6%
4938133 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 64.0 6.11e-01 100.0% 87.1%
4959591 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.71 55.0 5.70e-01 98.6% 93.8%
3952384 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.70 53.0 4.88e-01 97.2% 62.1%
3963335 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.68 60.0 4.89e-01 100.0% 53.5%
3952923 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.68 51.0 4.66e-01 98.6% 59.0%
3932710 4309.1.1.0 ↗ a+b complex topology › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases 0.68 49.0 3.83e-01 76.4% 71.0%
5073918 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.67 57.0 5.18e-01 97.2% 69.5%
3489023 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 59.0 5.00e-01 100.0% 72.5%
3879791 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.64 58.0 4.04e-01 100.0% 82.7%
5080395 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.64 55.0 4.71e-01 97.2% 59.1%
3734003 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 47.0 4.07e-01 100.0% 53.0%
3602299 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.60 51.0 4.09e-01 98.6% 46.7%
4974548 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.59 52.0 5.17e-01 98.6% 94.7%
3173835 377.1.1.46 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › AI2M-like_HNH 0.57 46.0 5.00e-01 87.5% 100.0%
3174403 378.1.1.14 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › AI2M-like_HNH 0.57 47.0 4.94e-01 88.9% 95.4%
3588377 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.57 50.0 4.49e-01 97.2% 70.0%
3593377 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 37.0 3.20e-01 73.6% 87.0%
3265357 221.1.1.8 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd 0.52 44.0 3.34e-01 97.2% 42.2%
2050161 2007.1.14.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 0.51 35.0 2.88e-01 73.6% 100.0%