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NC_048720.1__YP_009839345.1__HWB76_gp109__00147

Bact-Vir

NC_048720.1__YP_009839345.1__HWB76_gp109__00147

Identity

Accession:
NC_048720 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-67
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 56.0 6.19e-01 100.0% 90.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 54.0 5.15e-01 100.0% 63.4%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 58.0 6.05e-01 100.0% 86.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 4.96e-01 100.0% 61.6%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 49.0 5.18e-01 100.0% 87.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 5.39e-01 100.0% 93.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 4.39e-01 100.0% 47.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.40e-01 100.0% 93.2%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 50.0 4.58e-01 100.0% 62.8%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.38e-01 100.0% 80.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 4.91e-01 100.0% 88.2%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.59 39.0 4.06e-01 98.4% 72.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.26e-01 100.0% 74.2%
3sqfA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.56 43.0 3.84e-01 88.7% 56.8%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.56 49.0 3.50e-01 100.0% 73.9%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.53 42.0 3.31e-01 98.4% 82.5%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 3.37e-01 79.0% 56.4%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.03e-01 87.1% 94.6%
1ye9A02 2.40.470.10 Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain 0.50 38.0 3.30e-01 90.3% 49.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4184660 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 57.0 4.42e-01 100.0% 36.9%
3924375 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 58.0 5.44e-01 100.0% 73.3%
4874232 4.1.1.29 beta barrels › SH3 › SH3 › SH3 › PSI_PsaE 0.69 62.0 5.99e-01 100.0% 89.9%
4263339 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.68 59.0 5.38e-01 100.0% 72.5%
3276044 4.1.1.315 beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.66 59.0 3.57e-01 100.0% 16.1%
4491893 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.65 59.0 4.91e-01 100.0% 61.2%
3592525 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.51e-01 98.4% 62.7%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.82e-01 100.0% 76.5%
3890362 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.76e-01 93.5% 85.7%
3925589 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 53.0 5.10e-01 100.0% 88.6%
4655719 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 51.0 4.52e-01 100.0% 68.9%
3351369 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 49.0 4.00e-01 100.0% 67.2%
3833012 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.57 49.0 4.40e-01 100.0% 68.2%
3242923 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 45.0 3.68e-01 93.5% 62.3%
3272782 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.56 38.0 4.11e-01 80.6% 91.8%
3592075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 50.0 4.48e-01 100.0% 75.3%
4078162 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.46e-01 100.0% 81.1%
4555816 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.19e-01 100.0% 69.4%
3807651 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.55 48.0 4.00e-01 100.0% 65.5%
3252847 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 39.0 3.59e-01 82.3% 58.8%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 46.0 4.31e-01 100.0% 80.0%
4281699 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.28e-01 100.0% 80.0%
3786412 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.53 45.0 4.18e-01 100.0% 75.0%
4398068 5.1.2.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.52 41.0 2.70e-01 95.2% 27.9%
4944821 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 37.0 3.77e-01 77.4% 83.3%
3395095 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 36.0 3.59e-01 79.0% 76.9%
3175966 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.50 39.0 3.21e-01 87.1% 72.3%
3474420 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.50 39.0 3.10e-01 91.9% 41.3%
D2 high residues 84-163
PDB
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 4.86e-01 100.0% 56.5%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 51.0 4.45e-01 83.7% 79.5%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 52.0 4.70e-01 88.7% 95.5%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.62 47.0 3.52e-01 81.2% 54.4%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.61 52.0 3.81e-01 92.5% 75.8%
4ncbA01 3.30.530.60 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.60 38.0 3.16e-01 82.5% 35.6%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.59 43.0 4.07e-01 77.5% 100.0%
3lvtA03 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.63e-01 97.5% 48.1%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 4.27e-01 90.0% 88.3%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 52.0 3.68e-01 100.0% 37.9%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 48.0 4.42e-01 92.5% 82.5%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 43.0 3.56e-01 88.7% 46.0%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 36.0 3.91e-01 77.5% 79.7%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.57 44.0 3.55e-01 86.3% 75.0%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.57 38.0 3.21e-01 70.0% 41.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 34.0 3.87e-01 82.5% 81.7%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 4.11e-01 88.7% 90.2%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.67e-01 86.3% 88.5%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.74e-01 87.5% 88.3%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.54 43.0 3.61e-01 88.7% 86.8%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.54 40.0 2.90e-01 81.2% 31.7%
8enbA01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.53 38.0 3.78e-01 77.5% 92.8%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.52 41.0 3.22e-01 91.3% 83.4%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.42e-01 80.0% 80.7%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 39.0 3.08e-01 82.5% 57.5%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.43e-01 81.2% 62.1%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.50 38.0 3.30e-01 82.5% 96.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 63.0 5.58e-01 100.0% 56.4%
4051041 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.73 53.0 4.25e-01 86.3% 40.0%
3728712 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.67 51.0 3.11e-01 81.2% 23.4%
3559265 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 51.0 4.19e-01 83.7% 75.2%
4586503 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 49.0 4.11e-01 83.7% 79.3%
2035523 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.63 52.0 4.65e-01 91.3% 94.6%
3599731 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 3.90e-01 88.7% 63.6%
3215667 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.62 51.0 4.50e-01 91.3% 90.8%
3737341 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 52.0 4.42e-01 92.5% 63.1%
3300937 1.1.1.20 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.60 46.0 2.95e-01 82.5% 27.3%
3907178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.84e-01 100.0% 81.9%
3703275 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.18e-01 86.3% 94.8%
3702518 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.24e-01 86.3% 100.0%
3824290 1.1.1.28 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.59 45.0 2.98e-01 83.7% 23.4%
3701022 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.35e-01 96.2% 96.8%
3192002 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.58 43.0 3.30e-01 81.2% 87.5%
3967083 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.57 44.0 4.17e-01 83.7% 75.8%
3189800 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 46.0 3.79e-01 88.7% 91.7%
224067 6098.1.1.1 a+b two layers › BACOVA_05496-like › BACOVA_05496-like › BACOVA_05496-like › DUF4738 0.57 38.0 3.21e-01 70.0% 41.2%
3995685 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 45.0 4.12e-01 88.7% 93.6%
3677000 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 44.0 3.64e-01 87.5% 91.3%
4969760 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.55 43.0 3.72e-01 85.0% 85.4%
5082246 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 35.0 3.91e-01 88.7% 86.7%
3916527 11.1.1.640 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.55 41.0 3.44e-01 80.0% 85.7%
3488620 395.1.1.0 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.55 38.0 4.12e-01 72.5% 92.3%
4933294 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.55 42.0 3.70e-01 85.0% 86.4%
3265154 4252.1.1.10 beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.54 40.0 3.46e-01 78.8% 81.5%
3258054 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 47.0 3.95e-01 100.0% 93.1%
3426315 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 40.0 3.92e-01 80.0% 77.8%
3839607 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.54 43.0 3.89e-01 91.3% 89.8%
5053699 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.54 42.0 3.62e-01 83.7% 88.0%
4044404 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.54 40.0 3.77e-01 88.7% 62.9%
5077163 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.54 44.0 3.76e-01 91.3% 70.4%
3917799 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.04e-01 81.2% 50.7%
4101278 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.53 41.0 3.61e-01 85.0% 88.0%
3385898 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.53 44.0 3.59e-01 92.5% 79.4%
3466174 1.1.1.20 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.53 41.0 2.67e-01 83.7% 27.9%
4942841 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 43.0 3.83e-01 90.0% 73.9%
3518499 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 41.0 2.83e-01 85.0% 25.6%
4284384 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.53 40.0 3.55e-01 85.0% 86.4%
3593374 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 44.0 3.92e-01 93.8% 72.2%
5029482 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 40.0 4.03e-01 100.0% 81.2%
1758564 69.1.1.2 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.52 37.0 2.96e-01 82.5% 35.1%
5064585 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 39.0 3.83e-01 82.5% 88.9%
3262236 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.56e-01 81.2% 79.0%
3174953 69.1.1.2 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.51 39.0 2.80e-01 82.5% 28.4%
4965879 881.1.1.44 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.51 42.0 3.24e-01 91.3% 91.9%
3633470 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.50 40.0 3.48e-01 88.7% 58.9%
3922154 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.25e-01 80.0% 95.2%
3938746 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 44.0 2.86e-01 98.8% 66.3%
4945115 4252.1.1.10 beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.50 39.0 3.36e-01 85.0% 52.3%