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NC_048720.1__YP_009839425.1__HWB76_gp029__00227

Bact-Vir

NC_048720.1__YP_009839425.1__HWB76_gp029__00227

Identity

Accession:
NC_048720 ↗
Kingdom:
phage

Quality

56.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-95
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.77 61.0 4.39e-01 87.9% 32.3%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 61.0 4.91e-01 91.4% 100.0%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 65.0 5.40e-01 96.6% 92.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.74 59.0 5.09e-01 87.9% 58.7%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 63.0 5.27e-01 96.6% 90.8%
3lnlB02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 63.0 5.50e-01 98.3% 97.7%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 61.0 5.46e-01 94.8% 96.3%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 59.0 5.18e-01 93.1% 94.4%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 56.0 5.02e-01 87.9% 98.8%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 58.0 4.77e-01 93.1% 51.0%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.70 56.0 4.67e-01 94.8% 48.6%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.70 56.0 4.65e-01 94.8% 48.2%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 55.0 4.57e-01 93.1% 98.1%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 49.0 4.19e-01 77.6% 49.5%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.67 52.0 4.31e-01 86.2% 54.6%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.67 55.0 4.58e-01 96.6% 90.2%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 57.0 5.13e-01 94.8% 96.2%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.66 53.0 4.77e-01 91.4% 100.0%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.66 55.0 3.66e-01 94.8% 32.0%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 54.0 4.90e-01 96.6% 97.6%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.65 54.0 4.25e-01 93.1% 95.1%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 52.0 4.66e-01 93.1% 96.5%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 51.0 4.57e-01 93.1% 91.0%
3pyfA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.64 51.0 3.90e-01 87.9% 94.9%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 52.0 4.39e-01 89.7% 68.8%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.63 49.0 4.25e-01 89.7% 63.6%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 51.0 4.54e-01 96.6% 88.2%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 50.0 4.33e-01 91.4% 95.9%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 50.0 3.78e-01 100.0% 34.9%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.63 51.0 5.03e-01 91.4% 84.1%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 47.0 3.96e-01 89.7% 100.0%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 45.0 3.96e-01 96.6% 51.6%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 48.0 3.31e-01 91.4% 33.5%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.60 41.0 3.19e-01 84.5% 29.1%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 47.0 4.06e-01 89.7% 68.1%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.59 46.0 4.27e-01 89.7% 100.0%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 40.0 3.64e-01 89.7% 51.2%
4npjB01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 46.0 3.66e-01 96.6% 85.7%
4c91A04 2.60.120.1620 Mainly Beta › Sandwich › Jelly Rolls › 0.57 46.0 3.28e-01 91.4% 53.4%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 48.0 4.08e-01 93.1% 65.3%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.95e-01 94.8% 56.7%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.63e-01 96.6% 67.2%
2j58A03 3.30.1950.10 Alpha Beta › 2-Layer Sandwich › wza like fold › wza like domain 0.56 45.0 4.12e-01 93.1% 98.8%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 3.63e-01 91.4% 50.0%
2nq3A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 42.0 3.41e-01 91.4% 92.4%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 44.0 3.48e-01 93.1% 46.0%
2ep6A01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 42.0 3.41e-01 93.1% 42.6%
2wr1A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.53 41.0 2.87e-01 89.7% 28.5%
1hgeA01 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.53 44.0 3.04e-01 98.3% 41.7%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 41.0 3.83e-01 91.4% 91.1%
4f23A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.53 41.0 2.85e-01 89.7% 27.9%
4dxaB01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 42.0 3.64e-01 93.1% 55.7%
7a1rA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 41.0 3.39e-01 93.1% 44.9%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 41.0 4.11e-01 89.7% 88.5%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 39.0 3.54e-01 84.5% 71.3%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.30e-01 100.0% 49.0%
3m5gA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.51 39.0 2.73e-01 87.9% 24.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075567 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.80 65.0 5.25e-01 89.7% 100.0%
3423236 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 54.0 5.07e-01 82.8% 64.0%
4613363 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.71 59.0 3.79e-01 93.1% 34.1%
1937212 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.70 56.0 4.65e-01 94.8% 48.2%
4216562 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.69 55.0 4.82e-01 89.7% 93.3%
4228966 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.69 55.0 4.46e-01 87.9% 95.5%
4055405 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.69 60.0 4.72e-01 100.0% 100.0%
4930471 304.4.1.79 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MCR_D 0.68 52.0 4.43e-01 86.2% 85.0%
2496895 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.55e-01 89.7% 55.7%
5035636 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.67 55.0 4.68e-01 94.8% 83.0%
4989562 304.3.1.4 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MCR_D 0.66 51.0 3.93e-01 87.9% 66.2%
3993535 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 47.0 4.30e-01 89.7% 55.0%
3176986 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.66 49.0 4.34e-01 89.7% 54.1%
3507240 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 56.0 4.25e-01 100.0% 63.4%
5069565 304.26.1.0 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like 0.64 52.0 4.58e-01 96.6% 88.4%
3578897 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 53.0 4.65e-01 94.8% 75.6%
4947478 304.26.1.0 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like 0.63 51.0 4.51e-01 96.6% 90.5%
3540023 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.63 50.0 4.48e-01 93.1% 92.2%
199962 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.63 51.0 5.03e-01 91.4% 84.1%
3180219 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.63 52.0 4.14e-01 93.1% 63.3%
3761694 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.63 48.0 4.20e-01 87.9% 71.6%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 49.0 5.13e-01 93.1% 100.0%
3390573 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 48.0 4.84e-01 94.8% 83.1%
3402805 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 46.0 4.04e-01 93.1% 50.5%
4019157 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.61 50.0 4.24e-01 98.3% 78.7%
4008166 3115.1.1.10 a+b two layers › GP2-like › RplX-like › RplX-like › PF27430 0.61 50.0 4.32e-01 93.1% 67.4%
4879916 382.1.1.3 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.61 49.0 4.53e-01 91.4% 93.5%
5040129 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.60 49.0 4.32e-01 98.3% 86.3%
3348136 304.110.1.4 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N 0.60 49.0 4.06e-01 96.6% 70.4%
3274141 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.34e-01 91.4% 62.4%
4383342 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.60 48.0 4.04e-01 89.7% 62.0%
4977431 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 49.0 4.79e-01 94.8% 84.6%
4433786 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.60 47.0 4.24e-01 94.8% 62.4%
4884122 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.59 48.0 4.03e-01 93.1% 81.1%
3898409 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.59 49.0 4.22e-01 96.6% 57.0%
3495764 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.59 48.0 3.41e-01 91.4% 39.5%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.59 47.0 3.55e-01 91.4% 76.0%
3935404 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.59 45.0 3.95e-01 93.1% 55.6%
4122132 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 48.0 2.98e-01 91.4% 17.9%
4954188 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.58 44.0 3.34e-01 87.9% 32.9%
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.58 44.0 4.47e-01 89.7% 92.7%
3285320 304.5.1.2 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 0.57 47.0 3.92e-01 96.6% 94.5%
3622256 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 46.0 3.48e-01 93.1% 36.1%
3691291 7508.1.1.0 a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain 0.57 41.0 3.20e-01 77.6% 72.6%
3744530 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.56 46.0 3.86e-01 100.0% 57.3%
3630093 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 46.0 4.27e-01 94.8% 78.7%
5018298 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.54 45.0 3.73e-01 100.0% 54.8%
3242452 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 40.0 3.47e-01 86.2% 56.0%
3620456 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.53 40.0 3.39e-01 91.4% 46.4%
4203413 109.3.1.218 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_KRIT1 0.53 43.0 2.83e-01 93.1% 24.8%
2080145 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.52 39.0 3.48e-01 84.5% 66.7%
3931970 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 41.0 3.47e-01 93.1% 51.8%
4469838 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.51 43.0 3.18e-01 96.6% 42.4%
D2 high residues 108-155
PDB