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NC_048722.1__YP_009839690.1__HWB78_gp001__00001

Bact-Vir

NC_048722.1__YP_009839690.1__HWB78_gp001__00001

Identity

Accession:
NC_048722 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Karimacvirus› Streptomyces_phage_Wofford

TaxID: 2283267

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.77 47.0 4.67e-01 100.0% 58.5%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.77 55.0 5.87e-01 100.0% 86.8%
6kwzA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.67 44.0 3.77e-01 100.0% 41.8%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.66 42.0 3.41e-01 100.0% 34.8%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.65 42.0 3.41e-01 100.0% 35.4%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.78e-01 98.4% 80.6%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 40.0 3.11e-01 100.0% 28.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 48.0 4.54e-01 100.0% 72.4%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.60 46.0 4.23e-01 100.0% 64.6%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.60 43.0 3.40e-01 77.0% 97.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 47.0 3.41e-01 100.0% 31.1%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 3.81e-01 77.0% 96.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 46.0 4.06e-01 100.0% 56.5%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 3.82e-01 100.0% 52.0%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 43.0 3.08e-01 85.2% 98.0%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.61e-01 85.2% 92.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 47.0 4.08e-01 100.0% 60.4%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 49.0 3.73e-01 100.0% 88.0%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 44.0 3.37e-01 93.4% 67.3%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.42e-01 100.0% 42.1%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 44.0 3.20e-01 100.0% 30.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 36.0 3.32e-01 93.4% 51.2%
4ll1C02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.53e-01 100.0% 40.7%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 42.0 2.93e-01 90.2% 45.8%
4r7vA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.16e-01 83.6% 87.2%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 42.0 2.61e-01 100.0% 15.3%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.89e-01 100.0% 74.1%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 3.64e-01 100.0% 47.5%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 3.59e-01 100.0% 46.0%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.19e-01 85.2% 93.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.54 40.0 3.03e-01 93.4% 32.5%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.53 44.0 3.65e-01 100.0% 95.2%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 47.0 3.96e-01 100.0% 65.0%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 44.0 3.59e-01 100.0% 49.1%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.53 45.0 3.74e-01 98.4% 76.1%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.53 39.0 3.39e-01 80.3% 98.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.23e-01 88.5% 93.7%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.35e-01 100.0% 38.2%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.26e-01 91.8% 76.5%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 45.0 3.66e-01 100.0% 56.3%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.93e-01 100.0% 88.7%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 3.36e-01 100.0% 82.7%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.13e-01 73.8% 84.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.51 42.0 4.11e-01 100.0% 85.1%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.10e-01 83.6% 93.7%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 37.0 3.26e-01 100.0% 49.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 42.0 4.05e-01 100.0% 81.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4017407 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.75 44.0 4.16e-01 100.0% 50.0%
5023972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 51.0 4.57e-01 100.0% 51.8%
3289607 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.74 47.0 3.14e-01 100.0% 17.0%
4393929 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.67 45.0 2.84e-01 100.0% 12.6%
2565990 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.67 44.0 3.77e-01 100.0% 41.8%
3227025 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 55.0 5.62e-01 98.4% 98.3%
3508717 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 42.0 4.10e-01 98.4% 61.4%
3968615 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.62 52.0 3.98e-01 100.0% 65.0%
3994984 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.62 53.0 5.27e-01 100.0% 89.2%
3740511 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.61 46.0 4.05e-01 82.0% 54.4%
3755511 11.1.5.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › STAT_bind 0.60 41.0 3.42e-01 100.0% 41.0%
3688923 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.60 43.0 4.04e-01 82.0% 61.3%
3971152 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.60 51.0 3.96e-01 100.0% 64.8%
1836327 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 51.0 5.02e-01 100.0% 98.5%
4029250 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 44.0 3.97e-01 85.2% 58.0%
3942998 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.56 46.0 4.41e-01 93.4% 82.9%
3432877 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.55e-01 98.4% 93.8%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.54 48.0 3.84e-01 100.0% 52.5%
3405169 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.54 41.0 3.33e-01 96.7% 43.5%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.54 47.0 3.80e-01 100.0% 50.8%
3718212 2004.1.1.427 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.54 43.0 2.69e-01 100.0% 15.3%
3701985 2004.1.1.427 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.54 43.0 2.59e-01 100.0% 12.2%
3584555 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 45.0 4.36e-01 98.4% 88.6%
3442276 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.34e-01 86.9% 70.0%
3214234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.38e-01 100.0% 98.3%
1124198 3789.1.1.1 ↗ beta barrels › Rubella virus capsid protein C-terminal domain › Rubella virus capsid protein C-terminal domain › Rubella virus capsid protein C-terminal domain › Rubella_Capsid 0.52 38.0 3.27e-01 78.7% 95.0%
3693957 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 43.0 3.14e-01 98.4% 39.0%
3934695 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.51 43.0 3.83e-01 100.0% 78.9%
3815036 3397.1.1.0 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 0.51 45.0 3.56e-01 100.0% 54.4%