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NC_048723.1__YP_009839936.1__HWB79_gp011__00011

Bact-Vir

NC_048723.1__YP_009839936.1__HWB79_gp011__00011

Identity

Accession:
NC_048723 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.07e-01 98.3% 72.7%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 5.16e-01 98.3% 88.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.10e-01 96.7% 90.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.10e-01 96.7% 80.6%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 47.0 4.19e-01 96.7% 51.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 5.47e-01 98.3% 96.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.07e-01 98.3% 68.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.68e-01 100.0% 98.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.86e-01 100.0% 72.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 47.0 4.62e-01 95.0% 78.8%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.89e-01 96.7% 81.3%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.61 42.0 4.10e-01 71.7% 73.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.60 51.0 4.50e-01 100.0% 69.9%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.59 48.0 3.76e-01 96.7% 55.3%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 4.16e-01 90.0% 100.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 34.0 3.71e-01 78.3% 71.4%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.58 48.0 4.73e-01 100.0% 88.9%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 3.44e-01 86.7% 46.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 41.0 3.68e-01 100.0% 53.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.90e-01 98.3% 68.1%
5e4eC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.47e-01 100.0% 46.5%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.33e-01 93.3% 95.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.35e-01 100.0% 79.2%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.17e-01 95.0% 86.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 41.0 4.43e-01 96.7% 100.0%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.55 40.0 3.04e-01 81.7% 60.7%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.65e-01 100.0% 54.3%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.57e-01 100.0% 48.2%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 35.0 3.37e-01 75.0% 54.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.97e-01 100.0% 75.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 40.0 3.04e-01 100.0% 30.5%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 45.0 4.11e-01 100.0% 70.9%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 3.88e-01 93.3% 66.3%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 45.0 4.46e-01 100.0% 100.0%
3ng7X01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.02e-01 95.0% 63.8%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.53 45.0 3.22e-01 100.0% 84.1%
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 3.02e-01 95.0% 51.7%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.53 32.0 3.46e-01 75.0% 70.6%
4bfkA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.52 46.0 3.64e-01 100.0% 48.4%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 4.15e-01 98.3% 98.1%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 37.0 2.75e-01 75.0% 64.5%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.83e-01 93.3% 79.7%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.71e-01 78.3% 100.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 2.84e-01 100.0% 26.1%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 44.0 4.34e-01 100.0% 98.5%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 4.06e-01 93.3% 100.0%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.58e-01 83.3% 91.3%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 42.0 3.92e-01 98.3% 85.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.84e-01 98.3% 89.1%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.71e-01 100.0% 75.8%
7xc8A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.51 39.0 3.38e-01 83.3% 95.9%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 40.0 3.79e-01 91.7% 76.6%
6rjiA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 33.0 3.48e-01 76.7% 73.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.74e-01 96.7% 74.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 4.12e-01 98.3% 90.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 42.0 4.05e-01 100.0% 92.9%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.37e-01 100.0% 85.8%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959440 4.1.1.180 beta barrels › SH3 › SH3 › SH3 › DUF3107 0.91 83.0 8.05e-01 98.3% 100.0%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.79 69.0 6.60e-01 100.0% 100.0%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.77 67.0 6.25e-01 100.0% 97.3%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.76 65.0 6.22e-01 98.3% 100.0%
4400642 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.72 54.0 4.85e-01 96.7% 57.6%
135648 4.1.1.142 beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.71 53.0 5.21e-01 96.7% 75.4%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.42e-01 100.0% 79.7%
3977126 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.71 57.0 5.92e-01 100.0% 98.2%
3968342 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.71 55.0 5.79e-01 96.7% 98.1%
3290899 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 53.0 5.12e-01 98.3% 71.4%
3954254 4.1.1.387 beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.70 56.0 5.48e-01 100.0% 81.5%
4368811 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 53.0 5.51e-01 100.0% 90.9%
858452 4.1.1.476 beta barrels › SH3 › SH3 › SH3 › PF30873 0.70 56.0 4.81e-01 100.0% 55.2%
5027750 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.61e-01 100.0% 94.5%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.70 54.0 5.70e-01 96.7% 100.0%
4932434 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 52.0 5.02e-01 100.0% 71.4%
5002601 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.69 51.0 5.18e-01 95.0% 81.4%
5015352 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.10e-01 98.3% 66.3%
4432348 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 52.0 5.06e-01 100.0% 73.5%
4139090 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.69 52.0 5.39e-01 100.0% 90.9%
4540843 4.1.1.434 beta barrels › SH3 › SH3 › SH3 › DUF2642 0.69 52.0 5.09e-01 100.0% 76.9%
3839016 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 52.0 5.13e-01 100.0% 78.5%
4214438 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 56.0 5.48e-01 100.0% 84.6%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 51.0 5.29e-01 100.0% 90.9%
4248855 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 54.0 5.15e-01 100.0% 74.3%
3979842 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.68 54.0 5.60e-01 100.0% 98.2%
5028741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.03e-01 93.3% 89.1%
4044269 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 51.0 4.95e-01 100.0% 74.3%
4432457 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 51.0 4.94e-01 100.0% 75.7%
4226849 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 52.0 4.81e-01 100.0% 67.5%
4514731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 50.0 4.48e-01 100.0% 58.8%
5062120 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.79e-01 100.0% 69.5%
4252954 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 52.0 5.04e-01 100.0% 78.6%
4157193 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 51.0 4.95e-01 100.0% 77.1%
3590658 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.34e-01 100.0% 97.1%
5056826 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 52.0 5.08e-01 100.0% 83.1%
4093911 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 50.0 4.78e-01 100.0% 72.0%
5053906 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 53.0 5.35e-01 100.0% 93.3%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 49.0 4.85e-01 100.0% 80.0%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 52.0 4.88e-01 100.0% 74.7%
4459365 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 51.0 4.76e-01 100.0% 70.0%
5050320 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 50.0 4.74e-01 100.0% 72.0%
4044896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.70e-01 100.0% 72.0%
4971470 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 50.0 4.70e-01 100.0% 72.0%
4277213 4.1.1.431 beta barrels › SH3 › SH3 › SH3 › PF27152 0.63 47.0 4.50e-01 96.7% 70.0%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.13e-01 98.3% 90.5%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.46e-01 100.0% 57.3%
4554867 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 49.0 4.81e-01 100.0% 83.1%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.62 52.0 5.16e-01 100.0% 90.8%
4979291 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.62 50.0 4.69e-01 100.0% 73.3%
4024913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.26e-01 100.0% 69.2%
4284778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 52.0 4.90e-01 100.0% 78.7%
4083915 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 51.0 4.80e-01 100.0% 77.3%
4158712 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 46.0 4.50e-01 100.0% 77.1%
3263031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.22e-01 100.0% 75.4%
4120629 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 47.0 4.46e-01 100.0% 74.7%
5059830 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.58 50.0 4.44e-01 100.0% 75.6%
3256431 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.58 39.0 3.65e-01 95.0% 53.8%
3993250 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.57 41.0 4.22e-01 98.3% 83.6%
5042330 4203.1.1.0 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.57 44.0 4.21e-01 85.0% 90.0%
5010640 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 3.57e-01 76.7% 73.3%
3621818 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.56 40.0 4.20e-01 95.0% 92.0%
3037102 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.89e-01 98.3% 74.2%
4458466 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.54 43.0 3.79e-01 100.0% 56.8%
3523918 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.53 42.0 4.16e-01 98.3% 84.6%
2427475 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.85e-01 98.3% 73.1%
3173941 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.44e-01 98.3% 50.0%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.53 42.0 3.74e-01 98.3% 58.9%
3373330 4.1.1.337 beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.53 41.0 3.88e-01 100.0% 72.0%
4844109 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.52 39.0 3.72e-01 93.3% 69.0%
3781383 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 42.0 3.80e-01 100.0% 63.3%
3482683 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.32e-01 98.3% 96.7%
4933648 4203.1.1.0 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.52 42.0 4.16e-01 95.0% 95.4%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.51 44.0 4.15e-01 100.0% 80.0%
3541996 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.51 42.0 3.12e-01 100.0% 33.2%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.51 43.0 4.18e-01 100.0% 84.3%
3679362 4.1.1.351 beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.51 43.0 3.93e-01 98.3% 97.6%
3500548 375.5.1.1 few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind 0.51 31.0 3.12e-01 100.0% 56.7%
4991835 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.97e-01 91.7% 98.0%
3995431 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 43.0 4.03e-01 98.3% 94.7%
3782038 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.37e-01 100.0% 53.0%
3900733 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 40.0 3.91e-01 95.0% 95.7%