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NC_048728.1__YP_009840928.1__HWB84_gp111__00132

Bact-Vir

NC_048728.1__YP_009840928.1__HWB84_gp111__00132

Identity

Accession:
NC_048728 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Gilsonvirus› Streptomyces_phage_Comrade

TaxID: 2301714

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-54
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.68 61.0 5.38e-01 100.0% 91.0%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 50.0 4.54e-01 100.0% 61.9%
1auvA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 46.0 4.35e-01 100.0% 68.3%
5adxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 47.0 3.24e-01 87.0% 99.4%
3n6xA03 3.30.1490.270 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.58 43.0 4.06e-01 80.4% 94.6%
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 41.0 3.26e-01 87.0% 40.4%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 43.0 3.47e-01 97.8% 51.4%
4ipaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.90e-01 91.3% 93.4%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.53 39.0 3.87e-01 95.7% 76.9%
3uaqB01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 3.41e-01 100.0% 92.7%
1bq5A02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 39.0 2.75e-01 93.5% 23.4%
1f32A02 3.30.1120.50 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 0.51 37.0 3.56e-01 84.8% 91.7%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 38.0 3.11e-01 100.0% 87.7%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 38.0 3.06e-01 100.0% 87.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974805 2498.1.1.71 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Aminopep 0.74 67.0 3.98e-01 100.0% 16.3%
3862518 4076.1.1.2 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI 0.73 59.0 5.53e-01 100.0% 72.7%
4324589 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.72 62.0 5.59e-01 100.0% 93.8%
4957781 807.1.1.0 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) 0.72 62.0 6.09e-01 100.0% 98.0%
3945340 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.67 58.0 4.07e-01 100.0% 44.7%
3737842 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.66 54.0 3.12e-01 89.1% 12.9%
3279061 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.66 55.0 4.94e-01 100.0% 92.9%
5038351 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.64 49.0 3.19e-01 100.0% 17.2%
3482761 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 49.0 2.86e-01 84.8% 99.5%
4645961 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.61 45.0 3.08e-01 84.8% 75.8%
3689761 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.60 49.0 2.88e-01 93.5% 97.2%
5053716 308.2.1.0 ↗ a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.59 49.0 4.31e-01 100.0% 100.0%
4196780 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 40.0 4.32e-01 100.0% 97.1%
2754677 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.57 45.0 3.67e-01 100.0% 45.4%
5061536 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.54 43.0 3.51e-01 97.8% 99.0%
3361682 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.51 39.0 3.83e-01 97.8% 96.4%