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NC_048728.1__YP_009840950.1__HWB84_gp089__00154

Bact-Vir

NC_048728.1__YP_009840950.1__HWB84_gp089__00154

Identity

Accession:
NC_048728 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Gilsonvirus› Streptomyces_phage_Comrade

TaxID: 2301714

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-88
PDB
D2 high residues 94-151
PDB
Domain cluster: rep: OR180307.1__WNT46182.1__X__00085__D8-68
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.86 66.0 5.73e-01 100.0% 55.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.86 69.0 7.22e-01 100.0% 94.3%
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 65.0 5.64e-01 100.0% 57.0%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 66.0 6.71e-01 100.0% 89.5%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 61.0 6.11e-01 100.0% 80.0%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 62.0 6.05e-01 100.0% 76.6%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 58.0 6.04e-01 100.0% 85.2%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.78 60.0 5.44e-01 100.0% 62.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 69.0 6.27e-01 100.0% 76.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 68.0 5.25e-01 100.0% 47.1%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 69.0 6.93e-01 100.0% 98.3%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 63.0 6.51e-01 100.0% 98.1%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 63.0 6.21e-01 100.0% 85.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 69.0 6.65e-01 100.0% 92.2%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 69.0 6.59e-01 100.0% 89.4%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 66.0 6.51e-01 100.0% 90.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 66.0 6.61e-01 100.0% 94.9%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.06e-01 100.0% 57.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.79e-01 100.0% 84.5%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 5.75e-01 100.0% 74.3%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 66.0 6.37e-01 100.0% 93.8%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 63.0 6.01e-01 100.0% 98.5%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.58e-01 93.1% 95.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.68 60.0 5.82e-01 100.0% 88.9%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.80e-01 100.0% 90.3%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 5.52e-01 100.0% 92.6%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 49.0 3.82e-01 100.0% 38.4%
3hl8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.63 55.0 4.25e-01 100.0% 59.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.77e-01 100.0% 67.5%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.61 55.0 5.00e-01 100.0% 84.2%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 50.0 3.99e-01 100.0% 66.9%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.97e-01 91.4% 59.3%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 46.0 4.19e-01 100.0% 66.3%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.94e-01 94.8% 38.5%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.56e-01 100.0% 59.1%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.73e-01 87.9% 83.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 42.0 4.07e-01 94.8% 74.6%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.58e-01 93.1% 61.7%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.53 44.0 3.84e-01 100.0% 83.8%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 37.0 3.09e-01 74.1% 73.1%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 41.0 3.10e-01 94.8% 36.4%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.52 41.0 3.24e-01 89.7% 87.6%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 41.0 2.68e-01 96.6% 29.9%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 4.02e-01 100.0% 76.3%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.30e-01 94.8% 92.7%
7vpjA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 39.0 2.86e-01 89.7% 97.3%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 71.0 7.01e-01 100.0% 83.3%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 69.0 6.87e-01 100.0% 85.0%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.82 66.0 5.09e-01 100.0% 41.7%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 64.0 6.21e-01 100.0% 75.4%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 64.0 6.39e-01 100.0% 83.3%
3926207 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 65.0 6.73e-01 100.0% 94.3%
3508319 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 65.0 6.22e-01 100.0% 76.9%
None — 0.81 74.0 4.62e-01 100.0% 23.4%
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 62.0 5.17e-01 100.0% 50.5%
3782313 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 72.0 6.52e-01 100.0% 81.3%
3937006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 70.0 6.31e-01 100.0% 87.2%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 59.0 6.07e-01 100.0% 87.3%
4200822 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.77 69.0 6.72e-01 100.0% 88.9%
3270256 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 69.0 6.88e-01 100.0% 94.9%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 71.0 6.79e-01 100.0% 90.8%
3938415 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 71.0 6.83e-01 100.0% 93.8%
3625002 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.76 70.0 4.37e-01 100.0% 23.1%
4878827 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.76 69.0 6.77e-01 100.0% 91.9%
3566631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 70.0 6.20e-01 100.0% 73.8%
4218488 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 70.0 6.21e-01 100.0% 73.8%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 59.0 6.11e-01 100.0% 89.1%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 70.0 5.93e-01 100.0% 65.6%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 69.0 6.85e-01 100.0% 95.0%
3991896 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 69.0 5.79e-01 100.0% 65.3%
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 58.0 5.93e-01 100.0% 87.3%
3503332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 68.0 6.53e-01 98.3% 98.5%
3999507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 69.0 6.43e-01 100.0% 87.1%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 68.0 6.37e-01 100.0% 81.4%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 68.0 5.79e-01 100.0% 63.3%
4000858 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 69.0 6.42e-01 100.0% 87.1%
3520216 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 69.0 6.48e-01 100.0% 88.4%
3784140 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 6.24e-01 100.0% 92.7%
3743464 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 69.0 6.30e-01 100.0% 81.3%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 69.0 5.63e-01 100.0% 58.0%
3583296 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 69.0 6.42e-01 100.0% 87.1%
3488995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 68.0 6.57e-01 100.0% 89.2%
3626068 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.61e-01 96.6% 98.3%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.75 67.0 6.50e-01 100.0% 89.2%
3557677 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 68.0 6.40e-01 100.0% 87.1%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 68.0 6.21e-01 100.0% 78.7%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 66.0 6.20e-01 100.0% 80.0%
3631298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 68.0 6.21e-01 100.0% 78.7%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 68.0 6.79e-01 100.0% 96.7%
3598499 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 68.0 5.01e-01 100.0% 53.6%
3514345 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 68.0 6.53e-01 100.0% 95.4%
3480200 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 66.0 6.09e-01 100.0% 97.3%
3231675 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.74 66.0 6.17e-01 100.0% 80.0%
3227565 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 65.0 6.50e-01 96.6% 95.0%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 67.0 6.43e-01 100.0% 89.2%
3214474 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.73 62.0 5.21e-01 100.0% 55.0%
3926120 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.73 60.0 4.48e-01 100.0% 36.6%
3591211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 5.87e-01 100.0% 81.2%
3475429 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 6.18e-01 100.0% 92.9%
3948209 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.19e-01 100.0% 65.3%
3500084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 65.0 6.11e-01 100.0% 90.0%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 65.0 6.39e-01 100.0% 92.1%
3701345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.78e-01 100.0% 85.0%
3487837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 4.39e-01 100.0% 30.5%
2521867 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.26e-01 100.0% 57.1%
3538030 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 64.0 6.04e-01 100.0% 85.7%
3911248 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 65.0 5.55e-01 100.0% 90.0%
3495496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.47e-01 94.8% 86.3%
3525376 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 63.0 6.04e-01 100.0% 86.2%
3955562 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.71 63.0 5.16e-01 100.0% 74.3%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.75e-01 100.0% 87.9%
3673944 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.70 62.0 4.61e-01 100.0% 38.9%
4023315 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 61.0 5.33e-01 100.0% 71.1%
4340107 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.65e-01 100.0% 94.7%
3924760 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.21e-01 100.0% 63.3%
3251420 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.26e-01 100.0% 68.9%
3659671 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.66 58.0 5.49e-01 100.0% 81.4%
3576235 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.30e-01 100.0% 81.3%
3268923 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 58.0 4.73e-01 100.0% 55.2%
2426920 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.64 50.0 5.09e-01 100.0% 89.3%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.97e-01 100.0% 98.0%
3970503 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 44.0 3.37e-01 74.1% 99.2%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.61 54.0 4.14e-01 100.0% 53.8%
3408358 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 47.0 3.05e-01 94.8% 29.3%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.31e-01 100.0% 78.6%
3725498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.59e-01 100.0% 85.7%
4594302 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 43.0 3.52e-01 89.7% 44.3%
3254408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.52e-01 100.0% 86.2%
4024504 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.77e-01 93.1% 79.0%
3975862 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.53 42.0 3.89e-01 93.1% 93.8%
3415926 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.53 41.0 3.90e-01 96.6% 72.9%
3435691 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 37.0 3.61e-01 77.6% 83.1%
4190716 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.50 38.0 3.18e-01 89.7% 44.3%
3941442 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.50 42.0 3.30e-01 94.8% 47.7%