←Back to structures

NC_048729.1__YP_009841110.1__HWB85_gp085__00085

Bact-Vir

Identity

Accession:: NC_048729 ↗
Kingdom:: phage

Quality

67.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thetabobvirus› Mycobacterium_phage_Renaud18

TaxID: 2301701

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-69

PDB

Domain cluster: rep: NC_053210.1__YP_010001435.1__J1597_gp55__00055__D7-55

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24623.3 best	Phage_zn_bind_8	43.6	2.80e-11	96.4%	77.2%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1b7eA02	1.10.740.10	Mainly Alpha › Orthogonal Bundle › Transferase Inhibitor Protein From Tn5; Chain A, domain2 › Transferase Inhibitor Protein From Tn5; Chain	0.55	48.0	3.66e-01	98.2%	76.2%
6qigA01	3.40.390.10	Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain)	0.54	44.0	3.10e-01	94.5%	80.7%
5ay7B00	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.53	39.0	2.46e-01	81.8%	23.3%
1mc0A01	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.53	39.0	2.85e-01	81.8%	80.4%
1jm7B00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.52	39.0	3.30e-01	81.8%	71.1%
1f02T00	4.10.820.10	Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain	0.51	42.0	3.95e-01	90.9%	75.8%
3kraC00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.50	43.0	2.83e-01	100.0%	25.1%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3718286	376.1.1.8 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box	0.77	39.0	3.54e-01	100.0%	37.1%
4019692	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.76	38.0	2.94e-01	100.0%	23.5%
3681044	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.75	38.0	3.13e-01	100.0%	28.4%
3338669	64.1.1.1 ↗	beta meanders › WW domain-like › WW domain › WW domain › WW	0.61	46.0	4.68e-01	81.8%	90.9%
3221979	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.58	38.0	3.17e-01	85.5%	41.1%
3242811	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.55	38.0	3.17e-01	74.5%	81.0%
3203292	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.53	32.0	3.64e-01	96.4%	85.0%
3632626	222.1.1.10 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3	0.53	39.0	2.98e-01	78.2%	53.6%
3789440	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.52	36.0	2.74e-01	78.2%	30.8%
3906153	376.1.1.29 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4	0.52	39.0	3.34e-01	81.8%	84.4%
4540195	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.51	44.0	3.66e-01	98.2%	57.0%
3364964	102.1.3.6 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Nrap_D2	0.51	39.0	2.72e-01	81.8%	68.5%