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NC_048731.1__YP_009841446.1__HWB87_gp067__00067

Bact-Vir

NC_048731.1__YP_009841446.1__HWB87_gp067__00067

Identity

Accession:
NC_048731 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Tequintavirus› Escherichia_phage_fp01

TaxID: 2315695

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-90
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.80e-01 93.2% 89.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.71 47.0 5.52e-01 90.9% 100.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 5.23e-01 89.8% 93.8%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.68 43.0 4.34e-01 93.2% 62.6%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 39.0 4.83e-01 85.2% 100.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 40.0 4.75e-01 80.7% 96.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 47.0 5.22e-01 93.2% 97.0%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.66 39.0 4.58e-01 81.8% 91.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 38.0 4.61e-01 81.8% 96.2%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 38.0 4.72e-01 84.1% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.50e-01 95.5% 78.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 36.0 4.47e-01 72.7% 100.0%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.61e-01 97.7% 68.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 4.85e-01 98.9% 86.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 40.0 4.65e-01 81.8% 100.0%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 53.0 4.44e-01 93.2% 69.5%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 39.0 4.60e-01 78.4% 100.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 39.0 4.53e-01 80.7% 100.0%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.59 37.0 3.29e-01 88.6% 45.8%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 36.0 4.41e-01 73.9% 100.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 38.0 4.44e-01 78.4% 100.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 40.0 4.44e-01 83.0% 94.0%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.58 43.0 3.37e-01 93.2% 35.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.59e-01 94.3% 97.2%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 39.0 3.51e-01 95.5% 50.0%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 36.0 4.08e-01 85.2% 86.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.55 38.0 4.26e-01 96.6% 95.5%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.49e-01 71.6% 72.3%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 4.26e-01 83.0% 87.2%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.36e-01 72.7% 70.8%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.55 39.0 3.37e-01 93.2% 46.8%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 42.0 2.91e-01 83.0% 81.6%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.34e-01 71.6% 68.9%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 33.0 3.56e-01 80.7% 71.1%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 38.0 3.25e-01 72.7% 61.5%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.57e-01 97.7% 93.8%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 33.0 2.80e-01 94.3% 37.5%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.53 38.0 3.63e-01 93.2% 62.4%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 30.0 3.05e-01 83.0% 55.1%
1cbfA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.52 36.0 3.32e-01 96.6% 52.9%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 4.05e-01 80.7% 89.5%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 40.0 4.26e-01 90.9% 100.0%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 35.0 3.04e-01 71.6% 60.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 56.0 5.93e-01 90.9% 81.2%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 50.0 5.73e-01 93.2% 92.3%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.73 55.0 5.88e-01 93.2% 92.0%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 56.0 6.01e-01 92.0% 96.0%
3842631 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.69 46.0 5.05e-01 88.6% 87.1%
3523802 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 5.22e-01 87.5% 100.0%
3475965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 37.0 4.65e-01 75.0% 100.0%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.58e-01 93.2% 94.7%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 55.0 5.12e-01 93.2% 69.1%
3935130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 42.0 4.93e-01 89.8% 98.2%
3770399 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.67 50.0 4.69e-01 98.9% 63.6%
3743525 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.64 52.0 4.93e-01 100.0% 75.2%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.62 48.0 4.98e-01 93.2% 90.0%
3409896 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 47.0 4.45e-01 98.9% 67.6%
4386702 219.1.1.45 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Mac-1 0.62 54.0 3.67e-01 93.2% 33.4%
3911035 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.59 53.0 4.40e-01 100.0% 81.9%
4013810 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.83e-01 89.8% 86.7%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.59 43.0 4.54e-01 90.9% 86.3%
4331393 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 40.0 3.51e-01 72.7% 67.1%
3749245 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 44.0 3.91e-01 94.3% 56.2%
3404158 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.57 48.0 4.42e-01 94.3% 84.3%
5004573 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 39.0 3.33e-01 72.7% 66.4%
1037154 1.1.5.34 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 0.56 39.0 3.24e-01 71.6% 60.9%
4125768 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.56 39.0 3.34e-01 72.7% 70.7%
3066474 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.56 40.0 3.07e-01 90.9% 31.7%
5047862 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 39.0 3.32e-01 72.7% 66.9%
3721787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.62e-01 93.2% 92.9%
1138340 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 38.0 3.20e-01 71.6% 60.5%
3288278 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.55 39.0 3.41e-01 72.7% 73.3%
4975825 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 38.0 3.29e-01 72.7% 72.2%
4958989 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.55 38.0 3.20e-01 72.7% 72.3%
3691594 1.1.5.36 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.54 37.0 2.99e-01 71.6% 53.0%
3612351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.36e-01 84.1% 96.0%
4019128 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 41.0 3.24e-01 83.0% 87.4%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.54 46.0 3.81e-01 98.9% 60.4%
5035069 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 37.0 3.17e-01 72.7% 65.3%
4004815 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.53 46.0 4.18e-01 98.9% 88.6%
4973387 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 36.0 3.19e-01 72.7% 72.9%
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 4.16e-01 79.5% 100.0%
3283546 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 36.0 3.11e-01 72.7% 59.4%
4073610 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.52 40.0 3.66e-01 83.0% 100.0%
4246959 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 38.0 3.49e-01 83.0% 60.8%
3646521 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.51 38.0 4.04e-01 85.2% 93.3%
3204533 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.50 28.0 3.01e-01 88.6% 64.0%