←Back to structures

NC_048732.1__YP_009841567.1__HWB88_gp30__00030

Bact-Vir

NC_048732.1__YP_009841567.1__HWB88_gp30__00030

Identity

Accession:
NC_048732 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Yonseivirus› Klebsiella_phage_Seifer

TaxID: 2315475

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 175-265
PDB
Domain cluster: rep: MT764845.1__QNN99762.1__P67b_00003__00003__D406-477
D2 high residues 645-756
PDB
Domain cluster: rep: MT764845.1__QNN99762.1__P67b_00003__00003__D879-993
D3 medium residues 15-167
PDB
Domain cluster: rep: KY249644.1__ARB05720.1__X__00030__D14-160
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rbgD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 32.0 3.82e-01 100.0% 69.9%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 29.0 3.59e-01 100.0% 73.3%
5e5bA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.57 46.0 3.87e-01 84.3% 96.5%
6vt2A01 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 30.0 3.40e-01 100.0% 73.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3556650 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.66 32.0 3.88e-01 100.0% 69.0%
3240194 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.65 33.0 3.90e-01 100.0% 70.0%
3406849 11.1.1.102 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD 0.65 30.0 3.68e-01 100.0% 67.4%
2470554 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.64 31.0 3.79e-01 100.0% 71.1%
3773836 11.1.1.100 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set,C2-set_2 0.63 32.0 3.36e-01 100.0% 50.7%
3770960 11.1.1.192 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set_2 0.62 34.0 3.51e-01 99.3% 53.8%
5032095 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 29.0 3.71e-01 100.0% 75.6%
3916835 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.60 31.0 3.78e-01 100.0% 76.8%
3731894 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 31.0 3.79e-01 100.0% 87.0%
3480224 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 31.0 3.39e-01 100.0% 66.2%
None — 0.52 37.0 2.91e-01 73.9% 68.9%
1713378 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 35.0 3.97e-01 82.4% 92.1%
3972141 881.1.1.25 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 0.51 41.0 4.16e-01 88.9% 98.1%
D4 medium residues 270-363_418-439
PDB
Domain cluster: rep: NC_074755.1__YP_010774351.1__QJS28_gp38__00038__D369-473_584-611
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13550.14 best Phage-tail_3 31.6 2.20e-07 87.1% 55.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3719066 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.56 39.0 3.11e-01 72.4% 58.0%
3618613 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.55 39.0 3.40e-01 72.4% 81.7%
4933445 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.50 38.0 2.75e-01 79.3% 80.9%
D5 medium residues 364-417
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 61.0 5.75e-01 88.9% 68.3%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.80 69.0 5.32e-01 96.3% 46.2%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 61.0 5.49e-01 88.9% 65.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 63.0 5.72e-01 92.6% 75.0%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.75 62.0 4.95e-01 100.0% 45.5%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.40e-01 88.9% 69.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 5.69e-01 92.6% 73.6%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.73 64.0 5.33e-01 98.1% 55.8%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 64.0 5.30e-01 100.0% 58.5%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 4.69e-01 94.4% 76.1%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.72 59.0 4.95e-01 92.6% 55.9%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.71 60.0 5.32e-01 94.4% 67.1%
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.71 60.0 3.97e-01 96.3% 39.3%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 55.0 4.04e-01 87.0% 69.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.44e-01 81.5% 55.3%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 4.58e-01 88.9% 55.4%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 55.0 4.51e-01 92.6% 55.9%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.67 56.0 4.72e-01 94.4% 72.3%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 54.0 4.08e-01 94.4% 91.7%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 53.0 4.40e-01 92.6% 52.9%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 3.87e-01 88.9% 35.1%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 56.0 4.71e-01 98.1% 58.9%
1i2dA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.66 56.0 3.87e-01 96.3% 41.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 55.0 4.02e-01 94.4% 72.2%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.40e-01 90.7% 57.6%
4fk7A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.65 54.0 3.70e-01 96.3% 60.1%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.51e-01 94.4% 70.1%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 55.0 4.29e-01 96.3% 89.1%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 49.0 4.06e-01 85.2% 49.5%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 50.0 4.41e-01 87.0% 97.5%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 47.0 3.62e-01 87.0% 33.3%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 3.69e-01 83.3% 88.2%
5xgbA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 49.0 3.98e-01 98.1% 83.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.59 44.0 4.23e-01 79.6% 73.0%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 48.0 3.91e-01 100.0% 92.1%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 47.0 3.81e-01 90.7% 50.5%
1ll8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 49.0 3.86e-01 98.1% 62.3%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 44.0 3.52e-01 96.3% 48.9%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 3.55e-01 94.4% 97.1%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 44.0 2.98e-01 96.3% 35.7%
1x6cA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 42.0 3.47e-01 100.0% 63.6%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 40.0 3.70e-01 87.0% 98.6%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.27e-01 100.0% 74.6%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.51 40.0 3.22e-01 94.4% 71.3%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.38e-01 92.6% 50.0%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 3.43e-01 100.0% 76.4%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 40.0 3.11e-01 92.6% 60.6%
3gz8C01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 41.0 3.16e-01 96.3% 66.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965594 1.1.13.53 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 0.94 82.0 6.62e-01 96.3% 52.6%
3974369 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 64.0 5.47e-01 94.4% 57.6%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 59.0 5.44e-01 88.9% 64.3%
3641544 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 54.0 6.08e-01 81.5% 100.0%
3575776 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 59.0 6.09e-01 83.3% 92.0%
3970830 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 67.0 5.41e-01 98.1% 53.0%
3575865 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.75 58.0 5.33e-01 92.6% 64.3%
4387060 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 64.0 4.22e-01 96.3% 25.6%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.74 57.0 5.09e-01 90.7% 60.0%
4943219 205.1.1.123 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer2_BFD 0.74 60.0 4.33e-01 92.6% 31.6%
4342567 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.73 62.0 4.90e-01 96.3% 47.8%
3974575 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 61.0 5.09e-01 96.3% 68.4%
3968971 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.72 60.0 5.14e-01 94.4% 58.9%
3585652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 5.30e-01 85.2% 73.3%
4057590 1.1.5.86 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.72 61.0 4.56e-01 96.3% 45.7%
3682355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 50.0 5.05e-01 81.5% 72.7%
3971461 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 60.0 5.13e-01 96.3% 61.1%
4247994 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.71 60.0 4.93e-01 94.4% 59.0%
3387966 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 58.0 5.03e-01 92.6% 61.2%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 58.0 4.80e-01 90.7% 54.7%
3831409 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.70 60.0 4.85e-01 94.4% 93.0%
4883825 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.70 61.0 5.12e-01 98.1% 57.6%
3416672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 4.79e-01 92.6% 76.0%
4002655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 4.14e-01 88.9% 93.6%
3166182 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.69 57.0 4.95e-01 96.3% 61.1%
3540253 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.69 56.0 4.64e-01 88.9% 52.6%
3323474 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.69 59.0 4.97e-01 94.4% 78.9%
3707121 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 55.0 4.96e-01 90.7% 64.0%
4161622 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.68 58.0 5.19e-01 92.6% 72.0%
5024818 1.1.13.74 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › UPF0179 0.68 57.0 5.22e-01 94.4% 93.2%
4259249 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.68 55.0 4.70e-01 94.4% 74.7%
4333010 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.68 58.0 5.14e-01 92.6% 72.0%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.02e-01 88.9% 70.0%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 54.0 4.74e-01 90.7% 61.2%
2410381 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 55.0 4.87e-01 92.6% 63.3%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.66 56.0 5.05e-01 94.4% 90.7%
4042216 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.66 55.0 4.96e-01 92.6% 72.0%
4997160 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.66 55.0 4.55e-01 96.3% 98.0%
4490158 1.1.13.59 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Beta-barrel_GLAA-B_II 0.65 54.0 4.86e-01 92.6% 72.0%
4841506 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 52.0 4.47e-01 90.7% 84.1%
4934732 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 47.0 3.69e-01 79.6% 50.8%
3738332 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.64 54.0 3.83e-01 94.4% 64.9%
4952429 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 54.0 4.40e-01 96.3% 64.0%
3265716 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.42e-01 92.6% 98.9%
3669546 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.93e-01 90.7% 98.3%
4151877 1.1.7.79 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.62 51.0 4.24e-01 96.3% 61.9%
4020093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 3.99e-01 96.3% 67.4%
3770804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.33e-01 94.4% 71.8%
4503008 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.59 46.0 3.26e-01 92.6% 39.5%
3894561 221.1.2.16 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.57 50.0 4.13e-01 100.0% 96.0%
4126423 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.56 44.0 3.09e-01 94.4% 37.7%
4069712 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.55 44.0 3.12e-01 94.4% 38.5%
4945487 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.54 42.0 2.66e-01 88.9% 25.0%
3680490 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.53 39.0 3.13e-01 98.1% 34.8%
3797043 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 38.0 3.23e-01 79.6% 93.9%
3572649 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.53 38.0 3.52e-01 83.3% 73.8%
3612978 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 41.0 2.63e-01 96.3% 49.8%
D6 medium residues 474-629
PDB
Domain cluster: rep: NC_053010.1__YP_009999893.1__JT352_gp28__00028__D423-619
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ueyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 34.0 3.77e-01 100.0% 55.9%
2crmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 32.0 4.41e-01 98.1% 83.5%
1x5kA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 34.0 4.13e-01 100.0% 71.3%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 33.0 4.27e-01 100.0% 80.5%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 40.0 4.99e-01 75.6% 100.0%
1uenA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 34.0 3.82e-01 100.0% 63.2%
2dbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 32.0 3.79e-01 100.0% 67.0%
7wsoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 31.0 4.05e-01 100.0% 81.2%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.63 36.0 4.54e-01 80.1% 92.5%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 32.0 3.86e-01 100.0% 73.5%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 33.0 4.06e-01 100.0% 80.2%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 38.0 4.68e-01 89.1% 100.0%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 24.0 3.46e-01 92.9% 80.3%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 29.0 3.58e-01 100.0% 72.6%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 33.0 4.14e-01 72.4% 97.7%
8gz3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 35.0 4.24e-01 75.0% 100.0%
1tulA00 2.70.40.20 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Baculovirus telokin-like protein 20 0.57 34.0 4.01e-01 76.9% 88.2%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 30.0 3.58e-01 73.7% 80.4%
1l1jA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 34.0 3.84e-01 71.2% 84.7%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 35.0 4.14e-01 74.4% 99.1%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.53 29.0 3.56e-01 89.7% 85.4%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 27.0 3.63e-01 71.8% 100.0%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 37.0 4.24e-01 73.1% 100.0%
1x5xA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.63e-01 80.8% 83.5%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 24.0 3.45e-01 73.7% 100.0%
2ijzA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.50 34.0 3.98e-01 74.4% 100.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.80 39.0 5.73e-01 75.6% 100.0%
4072878 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.76 40.0 5.52e-01 76.3% 100.0%
4366483 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 41.0 5.38e-01 76.3% 100.0%
4338601 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 39.0 5.10e-01 73.1% 92.2%
4952899 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 38.0 5.20e-01 77.6% 100.0%
3597282 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.71 38.0 5.13e-01 77.6% 100.0%
3934481 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.71 34.0 3.86e-01 100.0% 60.0%
4391995 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 37.0 5.04e-01 78.8% 98.8%
4438946 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 37.0 4.92e-01 78.2% 98.8%
4060133 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 38.0 4.90e-01 79.5% 98.9%
4939469 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.65 38.0 4.77e-01 70.5% 93.7%
4229140 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 38.0 4.87e-01 80.1% 98.9%
4353877 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 37.0 4.69e-01 78.8% 92.6%
4055193 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 39.0 4.98e-01 93.6% 100.0%
4381868 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 37.0 4.78e-01 78.8% 98.9%
4592324 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 37.0 4.79e-01 78.2% 98.9%
4946634 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 36.0 4.67e-01 73.1% 96.7%
4581837 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 37.0 4.70e-01 78.8% 97.8%
4682467 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 37.0 4.60e-01 80.1% 93.7%
4023972 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 37.0 4.47e-01 80.1% 86.7%
4553723 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 37.0 4.64e-01 92.3% 95.8%
4955533 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 36.0 4.27e-01 71.8% 82.9%
5044652 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 35.0 4.56e-01 71.2% 100.0%
4395520 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 37.0 4.60e-01 92.9% 95.8%
4045917 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.62 36.0 4.11e-01 71.8% 76.5%
4069807 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 38.0 4.67e-01 71.8% 98.0%
5079180 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.61 35.0 4.39e-01 71.8% 96.7%
4328622 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.60 38.0 4.34e-01 73.1% 84.3%
4542561 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.60 37.0 4.35e-01 72.4% 87.3%
4132165 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 39.0 4.56e-01 73.7% 97.1%
3258964 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 32.0 4.04e-01 100.0% 88.9%
3813200 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.59 38.0 4.34e-01 75.6% 87.7%
3800913 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.59 40.0 4.32e-01 72.4% 80.7%
3868227 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 34.0 4.16e-01 75.0% 94.7%
3953578 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.57 40.0 4.32e-01 73.7% 84.6%
1005556 10.2.1.65 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › VP17_central_barrel 0.57 32.0 4.08e-01 72.4% 96.6%
3516562 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.57 42.0 4.41e-01 79.5% 84.3%
3972645 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 41.0 4.41e-01 75.0% 97.0%
3802051 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 32.0 3.93e-01 77.6% 90.5%
3725978 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 33.0 3.89e-01 78.8% 86.7%
1878750 11.1.1.171 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.55 29.0 3.53e-01 73.7% 79.4%
3402635 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 41.0 4.35e-01 77.6% 100.0%
4527829 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 32.0 3.82e-01 72.4% 93.7%
3709965 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.52 35.0 4.12e-01 75.0% 97.3%
127 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.51 35.0 4.10e-01 84.0% 100.0%