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NC_048736.1__YP_009841909.1__HWB92_gp041__00041

Bact-Vir

NC_048736.1__YP_009841909.1__HWB92_gp041__00041

Identity

Accession:
NC_048736 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Miltonvirus› Serratia_phage_vB_SmaA_3M

TaxID: 2419930

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-57
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 75.0 7.37e-01 100.0% 94.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 69.0 6.60e-01 100.0% 86.0%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 67.0 5.59e-01 100.0% 56.5%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 6.65e-01 100.0% 94.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 69.0 5.96e-01 100.0% 71.1%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 65.0 6.27e-01 100.0% 83.9%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 68.0 6.02e-01 100.0% 79.2%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 6.09e-01 100.0% 79.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 6.08e-01 100.0% 77.8%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 55.0 4.86e-01 80.0% 58.1%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.74 65.0 5.55e-01 100.0% 62.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 64.0 6.09e-01 100.0% 94.9%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 5.84e-01 100.0% 80.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 63.0 5.59e-01 100.0% 76.0%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 54.0 4.95e-01 82.0% 73.5%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 64.0 5.98e-01 100.0% 83.9%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.68e-01 100.0% 79.7%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 5.65e-01 98.0% 80.0%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 61.0 5.52e-01 100.0% 80.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 61.0 5.71e-01 100.0% 92.2%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 53.0 4.81e-01 84.0% 64.3%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 59.0 5.74e-01 100.0% 98.3%
4ii1A01 2.30.30.1190 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 5.19e-01 100.0% 90.0%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 51.0 4.81e-01 92.0% 66.1%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 58.0 5.49e-01 100.0% 88.7%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.54e-01 100.0% 96.6%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 4.82e-01 100.0% 54.2%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 55.0 5.38e-01 100.0% 98.2%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.20e-01 100.0% 91.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 5.16e-01 100.0% 91.7%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.84e-01 100.0% 73.0%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 44.0 4.63e-01 72.0% 95.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 5.15e-01 100.0% 100.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.26e-01 100.0% 97.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 56.0 5.63e-01 100.0% 98.0%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 43.0 3.43e-01 70.0% 68.6%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.05e-01 100.0% 46.0%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 50.0 3.59e-01 100.0% 34.1%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 4.42e-01 88.0% 91.8%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 47.0 3.40e-01 94.0% 98.1%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.43e-01 86.0% 92.2%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 3.55e-01 90.0% 92.7%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.54 43.0 3.43e-01 92.0% 53.1%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.21e-01 100.0% 92.3%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.52 37.0 2.73e-01 82.0% 35.9%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 40.0 3.43e-01 100.0% 52.0%
3f8dB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 39.0 2.80e-01 96.0% 53.0%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995669 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.86 78.0 6.72e-01 100.0% 93.3%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 77.0 7.20e-01 100.0% 85.0%
3558774 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.82 75.0 7.02e-01 100.0% 83.3%
3482225 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.81 73.0 5.31e-01 100.0% 38.5%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.80 73.0 5.15e-01 100.0% 42.1%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.80 73.0 6.29e-01 100.0% 88.0%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.80 69.0 6.67e-01 100.0% 85.5%
3744277 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.79 66.0 6.64e-01 100.0% 92.0%
3296864 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.79 64.0 6.03e-01 100.0% 73.3%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.79 71.0 5.28e-01 100.0% 41.7%
3486326 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 67.0 6.52e-01 100.0% 87.3%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.78 66.0 6.46e-01 100.0% 87.0%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.78 67.0 5.86e-01 100.0% 64.0%
3328489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 5.98e-01 100.0% 68.6%
3777241 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 66.0 5.09e-01 100.0% 43.6%
3821920 4.1.1.283 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.77 68.0 6.61e-01 100.0% 87.3%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.77 69.0 6.68e-01 100.0% 89.1%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 70.0 6.03e-01 100.0% 88.0%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 5.55e-01 100.0% 58.7%
3598271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 4.55e-01 100.0% 28.2%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 67.0 6.36e-01 100.0% 83.3%
3486271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 64.0 5.27e-01 100.0% 52.2%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.76 68.0 5.94e-01 100.0% 68.0%
3467678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 65.0 4.96e-01 100.0% 42.7%
3658643 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.76 65.0 4.59e-01 100.0% 32.4%
3581896 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.76 64.0 5.88e-01 100.0% 72.3%
3570368 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 67.0 5.34e-01 100.0% 50.0%
3609031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.27e-01 100.0% 49.0%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 6.21e-01 100.0% 83.3%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 5.79e-01 100.0% 66.7%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 6.08e-01 100.0% 80.0%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.85e-01 100.0% 72.9%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 6.23e-01 100.0% 83.3%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 65.0 5.47e-01 100.0% 58.8%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.73 65.0 5.70e-01 100.0% 66.7%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.73 65.0 5.09e-01 100.0% 51.4%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 4.89e-01 100.0% 41.7%
3514970 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 60.0 5.01e-01 100.0% 52.2%
3226615 4.1.1.389 ↗ beta barrels › SH3 › SH3 › SH3 › PF30352 0.73 64.0 5.21e-01 100.0% 55.8%
2893010 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.72 59.0 5.85e-01 100.0% 87.0%
3236896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.56e-01 98.0% 81.4%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 61.0 5.86e-01 98.0% 96.6%
3526953 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 62.0 5.79e-01 100.0% 90.5%
4168653 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.71 60.0 6.05e-01 100.0% 94.0%
3783847 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 62.0 5.72e-01 100.0% 89.2%
3938908 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 64.0 5.69e-01 100.0% 72.9%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 61.0 5.20e-01 100.0% 68.2%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 63.0 5.39e-01 100.0% 65.0%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 59.0 4.85e-01 100.0% 58.0%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.88e-01 100.0% 88.3%
3931417 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 58.0 5.58e-01 100.0% 96.7%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 56.0 4.56e-01 100.0% 56.5%
3214234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.48e-01 100.0% 93.3%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.68 58.0 5.24e-01 100.0% 85.7%
3323474 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.68 58.0 4.85e-01 100.0% 64.4%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.67 56.0 4.50e-01 100.0% 53.7%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.02e-01 100.0% 76.7%
3929784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.79e-01 100.0% 98.0%
3594811 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.13e-01 100.0% 98.5%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.08e-01 100.0% 81.0%
2717779 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 50.0 4.42e-01 100.0% 67.1%
4972785 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 45.0 4.59e-01 90.0% 89.8%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.58 45.0 3.87e-01 100.0% 85.0%
3596847 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.65e-01 100.0% 72.4%
3700022 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.54 42.0 3.57e-01 100.0% 71.4%
3593276 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.36e-01 100.0% 63.2%
3775561 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.53 41.0 3.34e-01 100.0% 67.2%
3824595 4011.1.1.3 ↗ beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › GH3_M 0.53 41.0 3.41e-01 90.0% 98.9%
3605177 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.50 39.0 3.22e-01 100.0% 68.3%