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NC_048736.1__YP_009841962.1__HWB92_gp094__00094

Bact-Vir

NC_048736.1__YP_009841962.1__HWB92_gp094__00094

Identity

Accession:
NC_048736 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Miltonvirus› Serratia_phage_vB_SmaA_3M

TaxID: 2419930

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-108
PDB
Domain cluster: rep: OK539832.1__UGL60173.1__X__00067__D28-96
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.65 37.0 4.38e-01 76.3% 85.4%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 54.0 4.22e-01 98.7% 81.2%
2reoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 42.0 3.16e-01 77.6% 65.2%
3oqvA00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.57 43.0 3.17e-01 81.6% 33.2%
3mvuA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.56 46.0 3.36e-01 93.4% 96.9%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 48.0 4.16e-01 98.7% 93.3%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 3.06e-01 82.9% 89.8%
1uddA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.53 46.0 3.40e-01 100.0% 99.5%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.52 36.0 2.60e-01 71.1% 29.7%
1b25A02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.52 39.0 3.11e-01 88.2% 36.5%
7k0aA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.34e-01 96.1% 94.1%
1chmA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.52 43.0 2.92e-01 88.2% 93.9%
5fgzA02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.52 42.0 3.31e-01 89.5% 60.7%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 43.0 3.64e-01 92.1% 100.0%
1mijA00 1.10.10.500 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeo-prospero domain 0.51 40.0 3.41e-01 89.5% 89.2%
1h9fA00 1.10.720.40 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.51 30.0 3.39e-01 97.4% 77.2%
3jvoA00 1.10.3230.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein 0.51 43.0 3.93e-01 89.5% 69.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689348 5048.1.1.1 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP 0.62 44.0 3.01e-01 75.0% 59.7%
3267988 5001.1.1.123 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PF29575 0.61 51.0 3.35e-01 96.1% 27.5%
4977806 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 46.0 3.93e-01 90.8% 93.1%
4680542 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.57 48.0 3.04e-01 100.0% 60.9%
3742622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 47.0 3.95e-01 97.4% 84.1%
2560572 109.2.1.75 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › PF31219 0.56 45.0 2.71e-01 88.2% 47.3%
3967241 635.1.1.1 ↗ alpha arrays › YgfB-like › YgfB-like › YgfB-like › UPF0149 0.56 43.0 3.35e-01 82.9% 47.9%
3391169 103.4.1.25 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF27628 0.55 43.0 4.47e-01 94.7% 95.7%
3169378 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.54 45.0 3.79e-01 94.7% 87.4%
5071935 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 45.0 3.85e-01 96.1% 93.1%
4935262 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.52 44.0 3.52e-01 96.1% 55.0%
5049089 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 3.33e-01 78.9% 85.0%
137156 150.1.2.5 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › TENA_THI-4 0.51 43.0 3.19e-01 98.7% 98.2%
2722313 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 45.0 3.30e-01 97.4% 79.1%
4997750 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.49e-01 93.4% 57.0%
3945879 101.38.1.4 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › PriCT_1 0.50 42.0 3.73e-01 90.8% 69.1%