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NC_048736.1__YP_009842025.1__HWB92_gp157__00157
Bact-VirNC_048736.1__YP_009842025.1__HWB92_gp157__00157
Identity
- Accession:
- NC_048736 ↗
- Kingdom:
- phage
Quality
70.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Miltonvirus›
Serratia_phage_vB_SmaA_3M
TaxID: 2419930
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-156
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24021.1 best | ACT_phage | 198.3 | 1.10e-58 | 100.0% | 88.6% |
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.74 | 41.0 | 5.39e-01 | 98.7% | 97.6% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.73 | 38.0 | 5.18e-01 | 92.1% | 100.0% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.73 | 39.0 | 5.26e-01 | 92.8% | 100.0% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.71 | 38.0 | 4.85e-01 | 94.1% | 87.8% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.71 | 40.0 | 5.25e-01 | 96.7% | 100.0% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.69 | 38.0 | 4.99e-01 | 98.7% | 97.6% |
| 3o1lB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 39.0 | 4.97e-01 | 96.1% | 96.6% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 32.0 | 4.41e-01 | 89.5% | 91.9% |
| 2cqiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.67 | 39.0 | 4.57e-01 | 99.3% | 82.5% |
| 2dgwA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 36.0 | 4.65e-01 | 96.1% | 97.5% |
| 2cq4A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 41.0 | 4.89e-01 | 98.0% | 95.9% |
| 2ewhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.66 | 36.0 | 4.60e-01 | 96.1% | 94.1% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.66 | 35.0 | 4.31e-01 | 96.7% | 82.8% |
| 1oo0B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 37.0 | 4.58e-01 | 96.1% | 90.2% |
| 3uwtA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.65 | 36.0 | 4.50e-01 | 93.4% | 90.9% |
| 1l3kA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.65 | 36.0 | 4.72e-01 | 93.4% | 98.8% |
| 2dnzA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 38.0 | 4.66e-01 | 99.3% | 93.5% |
| 2dnnA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 35.0 | 4.53e-01 | 91.4% | 96.3% |
| 5w0hA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 35.0 | 4.58e-01 | 94.1% | 98.8% |
| 2dgvA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 35.0 | 4.46e-01 | 94.1% | 92.0% |
| 2cphA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 34.0 | 4.55e-01 | 90.1% | 100.0% |
| 4iufA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 34.0 | 4.49e-01 | 90.8% | 100.0% |
| 1vjqA00 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.63 | 31.0 | 4.29e-01 | 96.1% | 95.9% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 37.0 | 4.65e-01 | 94.1% | 96.7% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 38.0 | 4.57e-01 | 99.3% | 90.9% |
| 3nwgA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.63 | 35.0 | 4.14e-01 | 96.1% | 79.2% |
| 2dnhA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 38.0 | 4.44e-01 | 98.0% | 85.7% |
| 3ns6A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 37.0 | 4.40e-01 | 94.1% | 93.9% |
| 1owaA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 38.0 | 4.42e-01 | 74.3% | 91.5% |
| 4ctaA02 | 3.30.70.2860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 30.0 | 4.01e-01 | 89.5% | 97.3% |
| 3d68A01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.58 | 34.0 | 4.17e-01 | 100.0% | 93.5% |
| 1qd1A01 | 3.30.990.10 | Alpha Beta › 2-Layer Sandwich › Formiminotransferase-cyclodeaminase; Chain B, domain 1 › Formiminotransferase, N-terminal subdomain | 0.58 | 52.0 | 4.89e-01 | 96.7% | 97.8% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.57 | 38.0 | 4.38e-01 | 100.0% | 92.0% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 38.0 | 4.41e-01 | 94.7% | 97.2% |
| 4ezeB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 46.0 | 3.73e-01 | 92.8% | 99.3% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4516880 | 304.8.1.74 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26539 | 0.78 | 39.0 | 5.29e-01 | 91.4% | 91.3% |
| 3943515 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.77 | 40.0 | 5.41e-01 | 94.1% | 96.2% |
| 4460422 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.75 | 40.0 | 5.38e-01 | 93.4% | 97.5% |
| 3974225 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.75 | 39.0 | 5.29e-01 | 94.1% | 96.2% |
| 4067121 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.75 | 40.0 | 5.22e-01 | 95.4% | 92.9% |
| 5037945 | 304.8.1.22 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT | 0.74 | 39.0 | 5.05e-01 | 96.1% | 90.6% |
| 5027481 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.73 | 35.0 | 4.67e-01 | 96.1% | 86.3% |
| 3458742 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.71 | 37.0 | 4.53e-01 | 94.1% | 78.9% |
| 4024149 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.70 | 42.0 | 5.01e-01 | 96.7% | 89.0% |
| 136544 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.70 | 37.0 | 4.88e-01 | 93.4% | 96.2% |
| 5023057 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.69 | 33.0 | 4.46e-01 | 93.4% | 89.3% |
| 4027543 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.69 | 39.0 | 4.93e-01 | 86.8% | 93.3% |
| 302769 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.69 | 39.0 | 4.80e-01 | 98.7% | 88.4% |
| 3784654 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.69 | 35.0 | 4.41e-01 | 94.1% | 79.8% |
| 3792021 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.68 | 39.0 | 4.31e-01 | 92.1% | 69.2% |
| 3816819 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.68 | 39.0 | 4.89e-01 | 97.4% | 94.4% |
| 3978701 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.68 | 37.0 | 4.62e-01 | 93.4% | 87.8% |
| 4928258 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.68 | 38.0 | 4.90e-01 | 92.8% | 98.8% |
| 4173219 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.68 | 35.0 | 4.41e-01 | 95.4% | 83.3% |
| 3728284 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.67 | 39.0 | 4.85e-01 | 96.1% | 95.6% |
| 3869662 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.67 | 37.0 | 3.77e-01 | 94.1% | 54.0% |
| 2884957 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.66 | 36.0 | 4.68e-01 | 94.1% | 100.0% |
| 3873124 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.66 | 37.0 | 4.55e-01 | 93.4% | 87.4% |
| 3268259 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.66 | 36.0 | 3.76e-01 | 96.1% | 55.9% |
| 3701903 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 38.0 | 4.27e-01 | 93.4% | 73.3% |
| 1734919 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.64 | 35.0 | 4.29e-01 | 96.7% | 83.2% |
| 4927291 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.64 | 37.0 | 4.69e-01 | 73.0% | 100.0% |
| 4134039 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.64 | 32.0 | 4.41e-01 | 91.4% | 97.3% |
| 3583291 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.64 | 40.0 | 4.33e-01 | 93.4% | 73.8% |
| 4022662 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.62 | 36.0 | 4.50e-01 | 95.4% | 98.8% |
| 3498350 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.62 | 35.0 | 4.12e-01 | 96.1% | 81.0% |
| 140754 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.62 | 35.0 | 4.24e-01 | 96.1% | 87.2% |
| 3254124 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 45.0 | 5.05e-01 | 94.7% | 95.8% |
| 2391188 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.61 | 35.0 | 4.14e-01 | 91.4% | 83.8% |
| 3996752 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 40.0 | 4.40e-01 | 84.2% | 80.8% |
| 3641835 | 304.8.1.9 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 | 0.60 | 39.0 | 4.69e-01 | 88.8% | 98.0% |
| 3594829 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 37.0 | 4.16e-01 | 88.2% | 80.9% |
| 3367924 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 39.0 | 4.35e-01 | 89.5% | 88.3% |
| 3206942 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.57 | 38.0 | 4.11e-01 | 96.7% | 80.0% |
| 3681987 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.54 | 40.0 | 4.10e-01 | 94.1% | 80.0% |
| 3672759 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.50 | 38.0 | 4.18e-01 | 96.7% | 98.4% |