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NC_048738.1__YP_009842142.1__HWB94_gp16__00016
Bact-VirNC_048738.1__YP_009842142.1__HWB94_gp16__00016
Identity
- Accession:
- NC_048738 ↗
- Kingdom:
- phage
Quality
67.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Guelinviridae›
Gregsiragusavirus›
Clostridium_phage_CPD2
TaxID: 2420237
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-81_202-231
Domain cluster:
rep: IMGVR_UViG_7000000032_000082-7000000032-SRS024132_Baylor_scaffold_31055__gene_65814__D14-100_176-207
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cxfA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 41.0 | 4.41e-01 | 87.5% | 79.3% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 40.0 | 4.37e-01 | 86.5% | 83.3% |
| 2f2cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 41.0 | 4.08e-01 | 89.4% | 66.1% |
| 1op1A00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.59 | 41.0 | 4.47e-01 | 89.4% | 89.0% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.59 | 32.0 | 4.13e-01 | 84.6% | 98.2% |
| 2w96A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 40.0 | 3.93e-01 | 89.4% | 65.5% |
| 1tf5A04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.57 | 45.0 | 3.81e-01 | 85.6% | 94.5% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.55 | 47.0 | 4.19e-01 | 96.2% | 92.3% |
| 4zpxA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 41.0 | 4.35e-01 | 97.1% | 94.6% |
| 2fsfB04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.53 | 42.0 | 3.42e-01 | 86.5% | 82.1% |
| 3buxB01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.53 | 43.0 | 4.05e-01 | 90.4% | 96.9% |
| 7w5lA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.51 | 36.0 | 2.72e-01 | 72.1% | 60.2% |
| 2kdoA02 | 1.10.10.900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › SBDS protein C-terminal domain, subdomain 1 | 0.51 | 31.0 | 3.56e-01 | 89.4% | 86.3% |
| 2id6A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 39.0 | 3.46e-01 | 84.6% | 90.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4977537 | 1174.1.1.0 ↗ | alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 | 0.60 | 44.0 | 3.59e-01 | 81.7% | 38.6% |
| 3389526 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.58 | 40.0 | 4.11e-01 | 85.6% | 74.0% |
| 4547023 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.57 | 46.0 | 3.67e-01 | 88.5% | 87.0% |
| 3685239 | 4323.1.1.2 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C | 0.54 | 44.0 | 3.79e-01 | 88.5% | 75.9% |
| 3593000 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.54 | 38.0 | 4.07e-01 | 84.6% | 88.2% |
| 3784792 | 192.15.1.129 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DAD | 0.54 | 36.0 | 3.61e-01 | 94.2% | 65.5% |
| 3721200 | 611.9.1.5 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › SesA | 0.52 | 43.0 | 4.08e-01 | 92.3% | 98.5% |
| 3285853 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.52 | 40.0 | 3.96e-01 | 85.6% | 78.2% |
| 3465074 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.51 | 42.0 | 4.01e-01 | 90.4% | 97.6% |
| 4232096 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.51 | 40.0 | 3.22e-01 | 84.6% | 82.3% |
| 3790050 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.50 | 45.0 | 3.00e-01 | 100.0% | 39.5% |