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NC_048741.1__YP_009842399.1__HWB97_gp254__00196

Bact-Vir

NC_048741.1__YP_009842399.1__HWB97_gp254__00196

Identity

Accession:
NC_048741 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mydovirus› Proteus_phage_Mydo

TaxID: 2483610

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 35-90
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 23.8 5.40e-05 89.3% 91.5%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.82 69.0 6.02e-01 100.0% 62.7%
6ip0A01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.55 41.0 2.62e-01 82.1% 15.2%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 43.0 4.03e-01 100.0% 73.0%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.51 33.0 2.89e-01 80.4% 39.1%
3hzeA00 3.30.70.1860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein family Ycf54 0.50 35.0 2.95e-01 76.8% 76.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.79 70.0 5.14e-01 100.0% 50.3%
5082962 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.78 64.0 5.11e-01 98.2% 46.4%
3839706 378.1.1.30 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 0.77 59.0 4.62e-01 82.1% 55.7%
4313114 378.1.1.30 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 0.77 58.0 4.53e-01 82.1% 55.0%
3343086 378.1.1.5 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_1 0.76 67.0 4.43e-01 100.0% 38.8%
5080086 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.71 60.0 5.33e-01 100.0% 66.3%
3269193 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.69 59.0 4.52e-01 100.0% 42.2%
3324312 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 52.0 4.27e-01 89.3% 48.2%
3804047 376.1.3.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.66 54.0 4.35e-01 100.0% 48.5%
3876488 632.7.1.31 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › RH_dom 0.65 53.0 4.54e-01 100.0% 57.6%
3780266 376.1.3.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.65 53.0 4.41e-01 100.0% 52.6%
3434619 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 55.0 4.46e-01 100.0% 51.3%
3438046 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 56.0 4.69e-01 100.0% 57.9%
5021347 376.1.2.45 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › DUF2180 0.64 51.0 4.86e-01 85.7% 73.8%
3413090 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 56.0 4.93e-01 100.0% 94.0%
3939139 376.1.3.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.63 52.0 4.35e-01 100.0% 53.7%
3245637 101.1.2.796 ↗ alpha arrays › HTH › HTH › winged helix domain › Lin-15B 0.59 53.0 4.07e-01 100.0% 53.2%
3972135 205.1.1.71 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7, Fer4_11 0.57 43.0 3.11e-01 83.9% 65.6%
3392923 377.1.1.18 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD 0.56 49.0 4.46e-01 100.0% 85.3%