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NC_048743.1__YP_009842719.1__HWB99_gp021__00021

Bact-Vir

NC_048743.1__YP_009842719.1__HWB99_gp021__00021

Identity

Accession:
NC_048743 ↗
Kingdom:
phage

Quality

65.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Barnyardvirus› Mycobacterium_phage_DrLupo

TaxID: 2499037

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 140-234
PDB
Domain cluster: rep: MH884509.1__AYP68439.1__BboS125_00070__00069__D112-199
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8i3jA01 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.79 40.0 2.85e-01 100.0% 19.1%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 43.0 4.37e-01 94.7% 63.8%
2yzsA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.65 51.0 3.87e-01 84.2% 60.1%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 41.0 3.98e-01 94.7% 63.2%
2jisA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.60 45.0 3.36e-01 80.0% 52.3%
7x4lC02 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.57 43.0 3.90e-01 80.0% 96.9%
3unvA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.56 40.0 2.77e-01 74.7% 83.1%
4lmiB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.62e-01 76.8% 100.0%
1w27A02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.55 46.0 3.15e-01 89.5% 47.3%
3c2bA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 45.0 3.90e-01 88.4% 95.9%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.54 47.0 3.02e-01 97.9% 92.9%
2uv8A05 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 40.0 2.46e-01 78.9% 75.9%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.64e-01 74.7% 100.0%
3w6wB01 1.10.1280.10 Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase 0.51 39.0 2.57e-01 82.1% 21.0%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.51 34.0 3.94e-01 75.8% 100.0%
2itmB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 39.0 3.02e-01 85.3% 37.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3893901 3826.1.1.56 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › TRIP4_3rd 0.75 32.0 3.68e-01 92.6% 54.3%
3603208 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 40.0 4.65e-01 93.7% 78.6%
3594965 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 40.0 3.53e-01 95.8% 43.6%
4026623 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.62 43.0 3.35e-01 72.6% 89.3%
3234976 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 40.0 3.80e-01 95.8% 56.4%
3818705 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.60 33.0 3.59e-01 70.5% 65.0%
5035493 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 38.0 3.67e-01 89.5% 59.0%
148225 602.1.1.3 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_aromatic 0.58 41.0 2.78e-01 72.6% 35.6%
3832390 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 43.0 3.92e-01 88.4% 62.4%
3634171 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.54 37.0 3.56e-01 71.6% 99.1%
1171131 191.1.1.11 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 0.54 43.0 3.88e-01 87.4% 67.2%
3991157 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.52 42.0 3.74e-01 92.6% 60.0%
3697694 4.1.1.288 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6540 0.52 38.0 3.52e-01 75.8% 72.0%
3929719 189.1.1.3 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › Plexin_cytopl 0.51 36.0 2.54e-01 73.7% 88.2%
5083528 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.50 32.0 3.40e-01 78.9% 71.8%
4354220 375.1.1.14 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p 0.50 28.0 3.32e-01 89.5% 89.1%
3721314 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.50 36.0 3.40e-01 74.7% 73.0%
3217457 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.50 40.0 4.13e-01 94.7% 90.0%