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NC_048743.1__YP_009842723.1__HWB99_gp025__00025
Bact-VirNC_048743.1__YP_009842723.1__HWB99_gp025__00025
Identity
- Accession:
- NC_048743 ↗
- Kingdom:
- phage
Quality
84.2
mean pLDDT
Taxonomy
TaxID: 2499037
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-93
Domain cluster:
rep: MW055913.1__QPX62561.1__SEA_WOLLYPOG_8__00008__D4-78
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.75 | 51.0 | 4.50e-01 | 70.0% | 60.2% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.73 | 64.0 | 5.20e-01 | 96.7% | 78.4% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 50.0 | 4.82e-01 | 74.4% | 73.8% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 51.0 | 5.62e-01 | 76.7% | 93.3% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 57.0 | 4.80e-01 | 91.1% | 86.8% |
| 5an3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 44.0 | 3.89e-01 | 76.7% | 46.5% |
| 5zw7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.67 | 57.0 | 4.84e-01 | 94.4% | 90.8% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.65 | 45.0 | 3.85e-01 | 83.3% | 43.7% |
| 1r0dA00 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.65 | 57.0 | 4.50e-01 | 100.0% | 83.9% |
| 2rfqC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.64 | 57.0 | 4.62e-01 | 100.0% | 85.1% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.64 | 41.0 | 4.65e-01 | 97.8% | 93.4% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.64 | 51.0 | 5.28e-01 | 87.8% | 89.4% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.63 | 50.0 | 4.67e-01 | 85.6% | 90.4% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.63 | 53.0 | 4.50e-01 | 92.2% | 75.5% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.63 | 45.0 | 3.18e-01 | 74.4% | 58.1% |
| 1yc9A01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.62 | 55.0 | 3.78e-01 | 100.0% | 66.4% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.62 | 51.0 | 5.07e-01 | 86.7% | 90.3% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.62 | 57.0 | 4.63e-01 | 98.9% | 93.2% |
| 4cbeA00 | 1.20.120.1640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 44.0 | 3.37e-01 | 74.4% | 35.9% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.62 | 54.0 | 3.46e-01 | 94.4% | 27.2% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.62 | 47.0 | 4.83e-01 | 81.1% | 95.3% |
| 3k2jA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.61 | 52.0 | 4.76e-01 | 95.6% | 90.1% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 50.0 | 4.70e-01 | 87.8% | 88.0% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 54.0 | 4.57e-01 | 100.0% | 82.5% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.61 | 47.0 | 4.39e-01 | 82.2% | 82.1% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.60 | 45.0 | 4.61e-01 | 86.7% | 82.0% |
| 4hfvA01 | 1.20.1440.330 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.58 | 43.0 | 4.04e-01 | 81.1% | 92.3% |
| 2yjkC00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 49.0 | 4.17e-01 | 97.8% | 79.6% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 49.0 | 4.71e-01 | 92.2% | 88.3% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 49.0 | 4.54e-01 | 91.1% | 74.3% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.57 | 45.0 | 4.30e-01 | 86.7% | 93.6% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.57 | 45.0 | 4.12e-01 | 85.6% | 94.0% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 44.0 | 4.54e-01 | 84.4% | 86.2% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.56 | 45.0 | 4.24e-01 | 86.7% | 94.5% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 41.0 | 4.46e-01 | 85.6% | 95.9% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.56 | 45.0 | 4.25e-01 | 87.8% | 93.6% |
| 2juaA00 | 1.20.1480.30 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein | 0.55 | 43.0 | 4.24e-01 | 87.8% | 100.0% |
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 44.0 | 4.44e-01 | 88.9% | 85.7% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 43.0 | 4.19e-01 | 84.4% | 90.1% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 42.0 | 4.06e-01 | 84.4% | 85.8% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 45.0 | 4.53e-01 | 96.7% | 90.0% |
| 3otnA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 48.0 | 2.99e-01 | 95.6% | 29.5% |
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.53 | 42.0 | 4.26e-01 | 83.3% | 90.8% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.52 | 41.0 | 3.90e-01 | 88.9% | 91.1% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 40.0 | 3.80e-01 | 87.8% | 97.3% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3276289 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.75 | 67.0 | 4.92e-01 | 95.6% | 90.2% |
| 4025746 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.75 | 64.0 | 5.11e-01 | 91.1% | 87.1% |
| 3645542 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.73 | 62.0 | 5.39e-01 | 92.2% | 90.4% |
| 3705915 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.72 | 63.0 | 5.73e-01 | 95.6% | 89.2% |
| 4160603 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.71 | 63.0 | 4.96e-01 | 94.4% | 74.9% |
| 3182665 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.71 | 48.0 | 4.76e-01 | 70.0% | 73.7% |
| 2320846 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.70 | 59.0 | 4.55e-01 | 91.1% | 84.2% |
| 3582455 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.69 | 49.0 | 5.24e-01 | 75.6% | 89.3% |
| 5040194 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.68 | 53.0 | 5.19e-01 | 83.3% | 87.0% |
| 4014485 | 5044.1.1.0 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like | 0.68 | 51.0 | 5.06e-01 | 94.4% | 74.7% |
| 4028957 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.68 | 62.0 | 5.00e-01 | 98.9% | 97.6% |
| 3962012 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 56.0 | 5.52e-01 | 87.8% | 88.4% |
| 4011740 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 51.0 | 4.90e-01 | 78.9% | 85.0% |
| 4034363 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 53.0 | 4.98e-01 | 85.6% | 92.7% |
| 5073374 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.67 | 43.0 | 4.38e-01 | 97.8% | 65.6% |
| 3965046 | 604.12.1.76 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA | 0.67 | 47.0 | 5.14e-01 | 76.7% | 94.3% |
| 3420847 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 52.0 | 4.25e-01 | 85.6% | 68.8% |
| 3969605 | 174.1.1.7 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4345 | 0.66 | 55.0 | 4.87e-01 | 88.9% | 93.6% |
| 3982669 | 5069.1.3.21 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF2569 | 0.64 | 49.0 | 4.98e-01 | 82.2% | 85.6% |
| 5075236 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.64 | 52.0 | 4.74e-01 | 87.8% | 78.3% |
| 4108644 | 603.1.1.215 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27853 | 0.63 | 50.0 | 4.72e-01 | 85.6% | 85.5% |
| 3388493 | 633.10.1.15 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 | 0.63 | 53.0 | 4.76e-01 | 94.4% | 91.5% |
| 3637470 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.63 | 55.0 | 4.41e-01 | 100.0% | 71.6% |
| 4027465 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 58.0 | 3.69e-01 | 100.0% | 36.0% |
| 3301922 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 48.0 | 2.99e-01 | 85.6% | 18.1% |
| 3282593 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.62 | 54.0 | 4.06e-01 | 100.0% | 79.6% |
| 4577909 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 50.0 | 3.91e-01 | 87.8% | 49.5% |
| 4033482 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 51.0 | 5.16e-01 | 88.9% | 97.8% |
| 3807070 | 109.52.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › FRIGIDA flowering-time regulator › FRIGIDA flowering-time regulator › Frigida | 0.60 | 47.0 | 3.37e-01 | 84.4% | 28.5% |
| 3418792 | 3755.3.1.400 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NET2A_C | 0.60 | 48.0 | 4.01e-01 | 87.8% | 86.9% |
| 3254229 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.60 | 45.0 | 4.84e-01 | 81.1% | 96.0% |
| 4936976 | 633.10.1.2 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Bbp7-like | 0.59 | 52.0 | 5.00e-01 | 97.8% | 99.0% |
| 2857735 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.58 | 49.0 | 4.80e-01 | 88.9% | 82.5% |
| 3934155 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 48.0 | 4.63e-01 | 88.9% | 82.0% |
| 3659915 | 192.7.1.45 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Na_sulph_symp | 0.58 | 45.0 | 4.94e-01 | 86.7% | 100.0% |
| 3255703 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.58 | 52.0 | 4.92e-01 | 98.9% | 96.3% |
| 1036846 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.57 | 46.0 | 4.24e-01 | 87.8% | 88.3% |
| 3831865 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.57 | 47.0 | 4.23e-01 | 94.4% | 94.6% |
| 4460268 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.57 | 44.0 | 3.53e-01 | 85.6% | 93.2% |
| 3374148 | 109.4.1.891 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_HEATR1 | 0.56 | 49.0 | 3.91e-01 | 100.0% | 85.6% |
| 4836886 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.56 | 46.0 | 4.72e-01 | 87.8% | 90.8% |
| 4138504 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.55 | 44.0 | 3.56e-01 | 87.8% | 96.8% |
| 4587950 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 49.0 | 3.64e-01 | 100.0% | 68.8% |
| 4872781 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.55 | 44.0 | 4.11e-01 | 87.8% | 71.9% |
| 3502133 | 109.4.1.2119 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N | 0.55 | 49.0 | 2.86e-01 | 100.0% | 14.7% |
| 3553783 | 109.4.1.1660 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27570 | 0.54 | 45.0 | 3.34e-01 | 94.4% | 47.5% |
| 3481519 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.53 | 43.0 | 3.30e-01 | 88.9% | 93.5% |