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NC_048743.1__YP_009842751.1__HWB99_gp053__00053

Bact-Vir

NC_048743.1__YP_009842751.1__HWB99_gp053__00053

Identity

Accession:
NC_048743 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Barnyardvirus› Mycobacterium_phage_DrLupo

TaxID: 2499037

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-64
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24254.2 best DUF7455 74.0 7.20e-21 82.8% 96.3%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mhsA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 57.0 4.62e-01 98.4% 62.2%
2bayE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 47.0 4.84e-01 79.7% 96.6%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 48.0 4.23e-01 81.2% 80.9%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 47.0 4.53e-01 81.2% 91.9%
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 47.0 4.39e-01 81.2% 83.7%
1wgmA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 47.0 4.52e-01 81.2% 94.5%
3knvA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 46.0 3.81e-01 81.2% 74.8%
2csvA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 41.0 3.96e-01 75.0% 59.7%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 42.0 4.41e-01 71.9% 93.2%
5dinA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 46.0 3.77e-01 81.2% 70.0%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 46.0 4.46e-01 82.8% 95.8%
3ztgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 43.0 3.89e-01 78.1% 67.4%
2csyA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 43.0 4.42e-01 76.6% 98.3%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 51.0 4.43e-01 96.9% 87.9%
3hctA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 44.0 3.82e-01 81.2% 84.6%
2yvrA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 38.0 4.17e-01 75.0% 93.3%
1rmdA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 41.0 3.82e-01 78.1% 65.1%
3ddtC00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 37.0 4.05e-01 73.4% 97.7%
4wz0A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 45.0 3.91e-01 92.2% 74.3%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 40.0 3.98e-01 79.7% 88.7%
1l0wA03 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.56 38.0 3.02e-01 70.3% 79.0%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 41.0 3.95e-01 81.2% 85.9%
1z6uA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 44.0 3.78e-01 93.8% 80.0%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 40.0 3.07e-01 84.4% 55.3%
7ejgC01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 43.0 3.80e-01 90.6% 85.7%
1cpyA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 37.0 2.39e-01 75.0% 75.1%
1odmA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.53 39.0 2.58e-01 82.8% 60.2%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.74e-01 90.6% 87.8%
1b2rA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 42.0 3.17e-01 92.2% 99.4%
1vw4F01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 36.0 3.31e-01 79.7% 80.6%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3787741 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.77 55.0 5.65e-01 81.2% 80.0%
3221207 376.1.6.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › zf-B_box 0.75 50.0 5.81e-01 71.9% 100.0%
3911624 904.1.1.2 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › CEBP_ZZ 0.74 50.0 5.72e-01 70.3% 100.0%
3514286 904.1.1.2 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › CEBP_ZZ 0.72 53.0 5.66e-01 78.1% 100.0%
3625527 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 49.0 5.24e-01 79.7% 100.0%
4025808 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 48.0 5.13e-01 78.1% 100.0%
3517104 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.66 57.0 4.87e-01 100.0% 89.1%
3902772 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.65 48.0 4.72e-01 79.7% 82.9%
3269796 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 44.0 4.69e-01 71.9% 100.0%
3906547 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.65 57.0 4.66e-01 100.0% 85.0%
3783329 376.1.1.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_ZNF598 0.65 45.0 4.06e-01 73.4% 62.2%
3225707 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 43.0 4.27e-01 70.3% 90.0%
3738947 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.64 46.0 4.11e-01 76.6% 61.1%
3593825 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 47.0 4.38e-01 81.2% 94.1%
3397204 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 51.0 4.53e-01 92.2% 76.0%
3479484 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 52.0 4.96e-01 90.6% 97.3%
3427984 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 54.0 4.80e-01 96.9% 71.6%
3869469 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 51.0 4.04e-01 90.6% 58.6%
3741205 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.63 54.0 4.65e-01 98.4% 89.5%
3347073 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.63 47.0 4.13e-01 81.2% 69.0%
1393554 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.63 46.0 4.22e-01 79.7% 85.2%
3861073 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 46.0 3.87e-01 79.7% 65.2%
4012910 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 47.0 4.25e-01 81.2% 75.6%
3257904 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.63 47.0 4.09e-01 81.2% 69.0%
3927096 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 47.0 4.40e-01 81.2% 86.3%
3611350 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.63 46.0 4.45e-01 79.7% 92.0%
3743942 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 46.0 4.16e-01 79.7% 75.6%
3593356 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 43.0 4.39e-01 73.4% 85.9%
3691750 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.62 46.0 3.55e-01 79.7% 43.6%
3264295 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 47.0 4.60e-01 82.8% 95.7%
3256523 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.62 44.0 4.24e-01 76.6% 82.7%
3225862 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.62 46.0 4.30e-01 81.2% 85.0%
None — 0.62 45.0 4.09e-01 79.7% 78.9%
3806101 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.61 42.0 4.36e-01 73.4% 95.0%
3601028 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 43.0 4.46e-01 75.0% 98.3%
3996137 376.1.1.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_ZNF598 0.61 45.0 4.31e-01 79.7% 80.0%
3567222 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.61 46.0 4.22e-01 81.2% 88.2%
3341777 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.61 44.0 3.68e-01 78.1% 68.3%
3553170 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.61 45.0 3.68e-01 81.2% 66.2%
3817884 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 44.0 4.48e-01 78.1% 96.8%
4011434 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 45.0 3.97e-01 79.7% 72.6%
1413915 377.1.1.27 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › KDM6_GATAL 0.61 50.0 4.79e-01 92.2% 80.0%
3733760 376.1.1.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_ZNF598 0.61 41.0 4.21e-01 70.3% 88.3%
3267414 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 44.0 3.63e-01 79.7% 54.4%
4026444 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 45.0 4.26e-01 81.2% 88.7%
3514231 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 50.0 3.93e-01 96.9% 58.7%
145621 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.60 44.0 4.05e-01 79.7% 79.3%
3667358 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.60 45.0 3.92e-01 81.2% 69.0%
3918037 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 43.0 4.38e-01 78.1% 96.9%
3788673 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.60 45.0 4.15e-01 81.2% 77.6%
3562826 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.60 50.0 3.81e-01 96.9% 68.5%
4273019 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 43.0 4.25e-01 78.1% 100.0%
3179858 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.60 44.0 3.86e-01 79.7% 75.0%
3929687 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.60 43.0 4.34e-01 78.1% 92.3%
4036241 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 49.0 3.76e-01 96.9% 62.9%
3600901 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.60 44.0 3.79e-01 79.7% 60.0%
3276478 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 44.0 4.06e-01 79.7% 76.5%
3275027 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 45.0 3.80e-01 82.8% 80.0%
3842229 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.60 44.0 4.06e-01 79.7% 74.1%
3793771 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.60 44.0 4.02e-01 79.7% 78.4%
3701077 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.60 44.0 4.25e-01 81.2% 92.0%
4248233 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.60 45.0 4.01e-01 82.8% 81.7%
3690656 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.60 43.0 3.83e-01 79.7% 72.0%
3270368 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.59 44.0 4.17e-01 81.2% 87.5%
3601774 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.59 47.0 4.44e-01 90.6% 88.7%
4134159 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.59 46.0 3.34e-01 84.4% 38.4%
3063695 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.59 49.0 4.37e-01 95.3% 93.8%
3744234 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.59 42.0 4.39e-01 78.1% 100.0%
3636256 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 42.0 3.82e-01 76.6% 83.3%
4190899 377.1.1.11 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.59 43.0 3.21e-01 79.7% 38.8%
3521656 386.1.1.42 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_Hakai 0.59 43.0 3.95e-01 81.2% 65.6%
4488994 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 43.0 4.37e-01 82.8% 100.0%
3266509 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.58 43.0 3.92e-01 81.2% 74.4%
3666869 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.58 51.0 4.31e-01 100.0% 68.5%
3551057 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.58 42.0 4.02e-01 81.2% 93.8%
1489496 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.58 45.0 3.97e-01 87.5% 76.2%
5023508 275.1.1.5 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.56 42.0 3.84e-01 81.2% 63.5%
4088673 377.1.1.11 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.52 43.0 3.19e-01 90.6% 47.3%