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NC_048751.1__YP_009843728.1__HWC07_gp047__00047

Bact-Vir

NC_048751.1__YP_009843728.1__HWC07_gp047__00047

Identity

Accession:
NC_048751 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lietduovirus› Pantoea_phage_vB_PagM_LIET2

TaxID: 2508071

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-156
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF25109.2 best HAD_PNKP 36.6 6.90e-09 100.0% 92.3%
PF03767.21 Acid_phosphat_B 37.3 3.00e-09 95.9% 56.1%
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xrpA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.92 78.0 8.34e-01 100.0% 98.4%
1ltqA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.88 79.0 7.99e-01 100.0% 93.7%
4fypB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.85 79.0 6.67e-01 100.0% 63.3%
2fi1A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.84 60.0 6.47e-01 100.0% 85.4%
2ybdA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.83 61.0 6.19e-01 100.0% 75.7%
3d6jA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.83 62.0 6.32e-01 100.0% 78.3%
4uavA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.82 61.0 5.91e-01 100.0% 69.6%
2om6A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.81 63.0 6.21e-01 100.0% 75.8%
2b0cA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.80 61.0 6.42e-01 100.0% 86.5%
4ex6A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.80 61.0 5.99e-01 100.0% 75.0%
4uw9A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.78 57.0 5.81e-01 100.0% 76.4%
1cqzB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.77 60.0 6.28e-01 100.0% 86.7%
4dccA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.76 57.0 5.99e-01 100.0% 86.0%
2i6xA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.75 56.0 5.82e-01 100.0% 82.8%
1cqzA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.72 66.0 6.40e-01 100.0% 88.3%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.70 54.0 5.70e-01 100.0% 89.1%
3fdxA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.69 56.0 5.92e-01 100.0% 96.1%
2rbgA00 3.40.50.11100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 52.0 5.62e-01 100.0% 92.7%
8inpA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.67 50.0 4.20e-01 100.0% 46.5%
7mi0A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.67 47.0 4.32e-01 100.0% 55.9%
6xl1A01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.64 50.0 4.89e-01 100.0% 75.5%
1lw7A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 54.0 5.13e-01 100.0% 77.5%
2wteA01 3.40.50.11700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 49.0 5.01e-01 100.0% 84.1%
3l6uA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 45.0 4.61e-01 73.8% 92.3%
1jmvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 54.0 5.52e-01 100.0% 93.6%
4wqmA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.62 49.0 5.17e-01 100.0% 91.0%
2ajrA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.62 47.0 3.84e-01 100.0% 43.4%
4rsmA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 44.0 4.44e-01 74.5% 84.7%
2x7xA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 44.0 4.55e-01 73.8% 78.3%
4evsA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 40.0 3.62e-01 100.0% 48.2%
3cr8C02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 46.0 4.16e-01 100.0% 59.1%
4iuyA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 51.0 4.21e-01 100.0% 52.6%
2ok8A02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.59 51.0 5.02e-01 100.0% 88.2%
3ca8A02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 52.0 5.13e-01 100.0% 91.0%
3fnrA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 52.0 4.11e-01 100.0% 78.3%
1fdrA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.57 50.0 4.98e-01 100.0% 90.1%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 44.0 3.74e-01 84.8% 95.6%
4y9tA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 47.0 4.47e-01 91.7% 77.3%
8dtpC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 48.0 4.02e-01 95.2% 61.8%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 44.0 4.30e-01 84.1% 92.4%
1zbsA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 36.0 4.23e-01 72.4% 100.0%
3ksmA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 46.0 4.57e-01 90.3% 87.3%
2vshA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 50.0 4.31e-01 100.0% 89.2%
4yo7A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 45.0 4.42e-01 91.0% 83.3%
2h3hB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 44.0 4.31e-01 90.3% 80.9%
3o3mD03 3.40.50.11900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 4.18e-01 100.0% 80.8%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.53 48.0 4.67e-01 100.0% 92.0%
4rweA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 45.0 4.37e-01 91.7% 83.6%
4ry8C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 44.0 4.23e-01 92.4% 79.5%
2xmzA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 3.41e-01 84.1% 94.7%
1b2rA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 48.0 4.57e-01 100.0% 90.4%
3h8lA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 3.99e-01 89.0% 78.1%
3c3kA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 44.0 4.55e-01 93.1% 98.6%
2y0eB03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 45.0 3.94e-01 95.9% 85.4%
4bguA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 46.0 4.67e-01 100.0% 99.3%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.50 39.0 4.14e-01 82.8% 97.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992093 2006.1.1.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.91 85.0 8.38e-01 100.0% 92.7%
5040082 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.89 74.0 7.72e-01 100.0% 92.6%
9887 2006.1.1.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.88 79.0 7.84e-01 100.0% 89.9%
4972563 2006.1.1.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.87 83.0 7.91e-01 100.0% 93.9%
4956037 2006.1.1.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.86 83.0 7.98e-01 100.0% 94.4%
3303560 2006.1.1.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.85 79.0 6.66e-01 100.0% 62.7%
5078078 2006.1.1.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.85 81.0 7.08e-01 100.0% 80.3%
4948796 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.84 80.0 6.84e-01 100.0% 83.3%
5065341 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.84 80.0 6.86e-01 100.0% 78.1%
3359389 2006.1.1.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.84 79.0 6.61e-01 100.0% 63.1%
3594808 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.84 80.0 6.68e-01 100.0% 82.9%
5073536 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.83 79.0 6.67e-01 100.0% 79.9%
3733836 2006.1.1.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_1 0.83 79.0 6.32e-01 100.0% 75.0%
4994524 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.83 79.0 6.63e-01 100.0% 79.6%
4014119 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.83 79.0 6.30e-01 100.0% 73.8%
3274590 2006.1.1.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_1 0.82 78.0 6.90e-01 100.0% 88.0%
4999216 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.82 77.0 6.56e-01 100.0% 79.6%
5001495 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.82 77.0 7.35e-01 99.3% 94.5%
4994385 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.79 75.0 6.28e-01 100.0% 85.7%
3727365 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.79 74.0 6.21e-01 100.0% 82.1%
3839301 2006.1.1.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.76 72.0 6.10e-01 100.0% 68.9%
3743962 2006.1.1.28 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › APP1_cat 0.75 71.0 6.03e-01 100.0% 65.3%
3307688 2006.1.1.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.75 69.0 5.72e-01 100.0% 59.6%
5037052 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.69 52.0 4.74e-01 100.0% 59.0%
5060275 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.68 54.0 5.70e-01 100.0% 93.8%
5077342 7592.1.1.6 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N 0.67 53.0 5.38e-01 100.0% 85.0%
2717225 7592.1.1.8 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF_Card1 0.66 51.0 4.98e-01 100.0% 73.1%
3587108 2005.1.1.72 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF30635 0.66 55.0 5.65e-01 100.0% 90.7%
3660261 2006.1.4.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN_YacP 0.66 51.0 4.84e-01 100.0% 67.4%
3279475 7567.1.1.1 ↗ a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.65 53.0 4.66e-01 100.0% 58.1%
5030088 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.65 61.0 5.26e-01 100.0% 67.9%
3604348 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.64 50.0 4.75e-01 100.0% 68.6%
4175938 2003.1.5.71 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.64 52.0 3.98e-01 86.2% 55.2%
4351028 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.62 52.0 4.62e-01 100.0% 63.7%
3459076 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.62 56.0 4.60e-01 100.0% 55.7%
3426978 2003.1.5.35 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.62 48.0 3.94e-01 83.4% 69.5%
3630889 7512.1.1.12 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.61 47.0 4.28e-01 100.0% 60.5%
4658050 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.60 50.0 4.70e-01 100.0% 73.7%
3269521 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.59 40.0 3.74e-01 85.5% 55.6%
3832178 2006.1.4.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN_YacP 0.58 53.0 4.87e-01 100.0% 79.5%
4964957 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 43.0 4.73e-01 84.8% 100.0%
3625925 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.57 49.0 3.81e-01 100.0% 43.2%
4536448 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 43.0 4.62e-01 85.5% 95.8%
3678002 7579.1.1.92 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.56 45.0 3.68e-01 84.8% 64.1%
4178958 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.56 50.0 4.27e-01 100.0% 60.9%
3399458 2003.1.6.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › DUF243 0.56 45.0 4.77e-01 88.3% 98.4%
5050973 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.55 44.0 4.68e-01 84.8% 100.0%
1937230 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.55 44.0 4.28e-01 84.1% 90.6%
4114168 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.54 38.0 4.10e-01 82.1% 84.0%
4575406 2007.1.14.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.53 43.0 3.72e-01 100.0% 56.7%
3396302 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.53 48.0 3.81e-01 100.0% 87.7%
4933350 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 42.0 4.44e-01 83.4% 96.1%
3942586 2004.1.1.107 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.53 47.0 3.93e-01 99.3% 66.5%
4002249 2007.1.4.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat 0.53 41.0 3.79e-01 82.8% 63.2%
4250283 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.52 34.0 3.94e-01 99.3% 92.4%
4973807 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.51 39.0 3.91e-01 80.0% 100.0%
4328835 2495.1.1.1 ↗ a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N 0.50 30.0 3.53e-01 82.1% 85.0%
4969494 2007.1.14.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.50 41.0 3.60e-01 100.0% 58.6%
D2 medium residues 179-276
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7r97A01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.68 47.0 4.09e-01 71.4% 78.4%
2hydA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.68 48.0 3.31e-01 73.5% 76.8%
2eb1C00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.67 47.0 3.90e-01 72.4% 76.3%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.65 49.0 3.19e-01 78.6% 34.7%
1o0wA01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.65 47.0 4.03e-01 75.5% 77.9%
3lwjA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 43.0 3.44e-01 70.4% 68.9%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 42.0 4.33e-01 70.4% 96.8%
4mk6A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 43.0 3.49e-01 73.5% 78.2%
3ungC01 3.30.70.2220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-Cas system, Cmr2 subunit, D1 domain, cysteine cluster 0.61 46.0 3.46e-01 80.6% 82.9%
6e1kA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 42.0 4.04e-01 71.4% 75.0%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 36.0 4.19e-01 83.7% 90.9%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.57 47.0 3.62e-01 91.8% 77.1%
3jsjC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 42.0 3.45e-01 78.6% 79.2%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.57 42.0 3.26e-01 77.6% 60.9%
1jfzA00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.56 49.0 4.24e-01 93.9% 79.1%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 33.0 2.95e-01 94.9% 45.0%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.53 40.0 3.04e-01 80.6% 87.4%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.52 42.0 4.30e-01 86.7% 93.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587847 5076.2.1.4 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › GPDPase_memb 0.69 50.0 4.21e-01 74.5% 65.0%
3171709 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.69 47.0 4.01e-01 71.4% 69.4%
3807209 148.1.3.56 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Arv1 0.68 48.0 3.95e-01 73.5% 83.1%
3249078 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.67 47.0 4.50e-01 72.4% 88.2%
3984343 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.66 43.0 3.40e-01 71.4% 32.5%
3901231 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.65 38.0 3.59e-01 74.5% 48.3%
4956012 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 45.0 4.47e-01 73.5% 84.8%
4295514 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 44.0 4.35e-01 73.5% 92.4%
5064519 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.62 45.0 4.28e-01 76.5% 73.0%
3601187 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.60 39.0 3.57e-01 76.5% 52.0%
3713869 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.60 43.0 3.30e-01 73.5% 85.0%
3448297 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.60 41.0 3.08e-01 70.4% 36.5%
4094218 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.60 44.0 4.25e-01 76.5% 74.5%
3612403 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.59 42.0 3.67e-01 73.5% 66.2%
3598426 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.57 41.0 3.84e-01 73.5% 85.7%
4371240 632.7.1.55 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › DUF2605 0.56 39.0 3.97e-01 71.4% 98.9%
4086933 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.55 39.0 4.20e-01 73.5% 94.1%
3246610 109.26.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_NUP160_120_M 0.54 42.0 2.77e-01 81.6% 47.7%
4237257 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.54 39.0 4.08e-01 75.5% 97.8%
3281424 3755.3.1.299 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF445 0.51 33.0 2.82e-01 94.9% 37.1%
4406266 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.51 39.0 4.10e-01 80.6% 98.9%