←Back to structures

NC_048751.1__YP_009843772.1__HWC07_gp091__00091

Bact-Vir

NC_048751.1__YP_009843772.1__HWC07_gp091__00091

Identity

Accession:
NC_048751 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lietduovirus› Pantoea_phage_vB_PagM_LIET2

TaxID: 2508071

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-110
PDB
Domain cluster: rep: OR180307.1__WNT46115.1__X__00018__D16-112
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22479.3 best Pam3_gp18 65.8 5.80e-18 93.6% 95.0%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.67 37.0 4.13e-01 77.1% 67.4%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 36.0 3.83e-01 94.5% 61.9%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.63 32.0 4.01e-01 81.7% 81.5%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.62 45.0 4.15e-01 74.3% 80.9%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 33.0 4.28e-01 74.3% 93.7%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.58 32.0 4.08e-01 73.4% 96.6%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.58 31.0 3.75e-01 83.5% 78.9%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.58 43.0 4.09e-01 94.5% 66.1%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 32.0 3.30e-01 70.6% 57.3%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 4.34e-01 93.6% 86.3%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 49.0 3.41e-01 99.1% 68.2%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 42.0 3.88e-01 79.8% 99.3%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 4.11e-01 85.3% 72.6%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.82e-01 71.6% 97.4%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.55 45.0 3.24e-01 89.9% 60.2%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 43.0 3.78e-01 84.4% 94.5%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 48.0 3.42e-01 99.1% 80.5%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.95e-01 85.3% 78.7%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 48.0 3.40e-01 100.0% 85.1%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 3.11e-01 87.2% 47.2%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 3.14e-01 72.5% 59.5%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.52 35.0 3.79e-01 87.2% 83.3%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.21e-01 96.3% 51.8%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 40.0 3.20e-01 82.6% 64.9%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.88e-01 93.6% 67.6%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 41.0 3.50e-01 89.0% 78.6%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.57e-01 85.3% 92.0%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 40.0 3.80e-01 85.3% 75.8%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.51 35.0 3.88e-01 84.4% 91.7%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 44.0 3.24e-01 98.2% 60.6%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.50 36.0 2.78e-01 74.3% 50.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045854 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.74 37.0 4.31e-01 72.5% 66.3%
3968112 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 37.0 3.28e-01 87.2% 38.3%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.65 45.0 5.01e-01 91.7% 92.9%
3964119 5084.5.3.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.61 45.0 3.06e-01 76.1% 65.5%
3411079 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.61 49.0 4.19e-01 87.2% 95.0%
3890928 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.61 43.0 3.65e-01 72.5% 93.9%
3914464 11.1.1.562 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BTBD16_C 0.60 51.0 4.73e-01 92.7% 90.0%
3404871 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.58 42.0 4.21e-01 83.5% 73.6%
3264296 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 50.0 4.57e-01 93.6% 80.7%
None — 0.57 47.0 2.90e-01 91.7% 30.7%
3406725 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.57 48.0 3.64e-01 93.6% 81.1%
3597115 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.56 48.0 4.79e-01 93.6% 99.1%
3866695 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.56 42.0 3.76e-01 78.9% 98.1%
3666722 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.56 48.0 4.35e-01 92.7% 84.1%
4849080 5084.1.1.44 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HphA_C 0.56 39.0 4.40e-01 80.7% 100.0%
3216442 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.56 38.0 3.12e-01 89.9% 36.7%
1249950 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.55 41.0 4.65e-01 90.8% 100.0%
1066273 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.55 44.0 4.11e-01 85.3% 72.6%
3987705 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.55 36.0 3.88e-01 89.9% 76.8%
4958749 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.55 43.0 3.63e-01 85.3% 91.1%
4890223 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 41.0 2.85e-01 78.9% 35.2%
3340789 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 44.0 3.05e-01 86.2% 27.7%
3336515 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 41.0 2.91e-01 84.4% 27.3%
3660574 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.26e-01 96.3% 70.8%
4027923 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 2.97e-01 97.2% 34.1%
3925780 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 44.0 3.08e-01 90.8% 43.0%
5054384 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.53 34.0 3.96e-01 94.5% 100.0%
3300916 5.1.4.231 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.52 42.0 3.09e-01 86.2% 32.7%
3995669 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 42.0 3.21e-01 86.2% 47.2%
5015089 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 3.35e-01 91.7% 42.4%
4506585 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.51 38.0 3.36e-01 77.1% 74.8%
4010371 295.1.1.45 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30238 0.51 41.0 4.34e-01 84.4% 97.9%
4978501 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 43.0 3.96e-01 95.4% 86.6%
3584285 5.1.11.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DPPIV_N 0.51 43.0 2.96e-01 94.5% 55.7%
3257297 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.83e-01 78.9% 96.5%
3193899 5.1.4.323 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_1st 0.51 44.0 2.64e-01 97.2% 36.8%
3653947 71.1.1.17 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.51 43.0 3.69e-01 93.6% 72.2%
3618350 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.50 42.0 2.95e-01 92.7% 41.6%
3831652 71.1.1.17 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.50 40.0 3.59e-01 87.2% 78.5%
3721408 5.1.3.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 0.50 43.0 2.98e-01 96.3% 52.5%