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NC_048751.1__YP_009843782.1__HWC07_gp101__00101

Bact-Vir

Identity

Accession:: NC_048751 ↗
Kingdom:: phage

Quality

75.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lietduovirus› Pantoea_phage_vB_PagM_LIET2

TaxID: 2508071

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-116

PDB

Domain cluster: rep: NC_048077.1__YP_009813485.1__HOU32_gp040__00040__D22-118

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4o2wD00	2.130.10.30	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	0.59	47.0	3.39e-01	87.1%	88.2%
4l1mB00	2.130.10.30	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	0.59	46.0	3.39e-01	87.1%	88.5%
7fjlA02	3.90.380.10	Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	0.57	48.0	3.76e-01	90.5%	74.1%
1i2mB00	2.130.10.30	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	0.57	46.0	3.29e-01	89.7%	98.7%
3dsmA00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.56	47.0	3.49e-01	94.0%	95.1%
5m8cB01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.54	46.0	3.44e-01	99.1%	89.3%
3dasA00	2.120.10.30	Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain	0.53	42.0	3.17e-01	87.9%	93.4%
6x05A01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.53	42.0	3.04e-01	87.9%	92.3%
4fpwB00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.52	40.0	3.61e-01	81.9%	70.2%
2uz8A01	3.40.30.90	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin ›	0.52	20.0	2.90e-01	99.1%	75.9%
2xvlA01	2.60.40.1760	Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31)	0.51	45.0	3.64e-01	99.1%	79.5%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3602012	331.23.1.0 ↗	a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain	0.58	32.0	4.10e-01	71.6%	91.4%
2796039	331.3.1.21 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like › LigXa_C	0.57	48.0	3.64e-01	90.5%	66.4%
3172856	5.1.4.575 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290	0.57	45.0	3.53e-01	87.9%	88.2%
4147907	9.1.1.14 ↗	beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS	0.57	47.0	4.44e-01	89.7%	97.1%
3875597	77.3.1.0 ↗	beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain	0.53	42.0	2.99e-01	87.9%	90.3%
3722558	331.23.1.4 ↗	a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C	0.52	33.0	3.89e-01	70.7%	91.3%
3781457	331.23.1.4 ↗	a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C	0.52	32.0	3.89e-01	79.3%	96.0%
3164837	101.15.1.2 ↗	alpha arrays › HTH › LysM domain › LysM domain › OapA	0.51	31.0	3.67e-01	83.6%	87.5%
3628642	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.51	41.0	3.02e-01	90.5%	93.4%