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NC_048751.1__YP_009843790.1__HWC07_gp109__00109

Bact-Vir

NC_048751.1__YP_009843790.1__HWC07_gp109__00109

Identity

Accession:
NC_048751 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lietduovirus› Pantoea_phage_vB_PagM_LIET2

TaxID: 2508071

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-44
PDB
Domain cluster: rep: IMGVR_UViG_3300005835_000100-3300005835-Ga0078910_10067915__D4-44
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.83 76.0 6.67e-01 100.0% 74.1%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.74 55.0 5.67e-01 97.4% 91.2%
2cjsC01 3.30.60.120 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.68 58.0 5.85e-01 100.0% 97.4%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 53.0 4.86e-01 97.4% 69.2%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 56.0 4.51e-01 100.0% 52.7%
4ccgY00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 44.0 3.78e-01 100.0% 56.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979944 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.94 83.0 8.17e-01 100.0% 92.5%
1002459 378.1.1.13 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 0.83 76.0 6.77e-01 100.0% 76.9%
4015300 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 72.0 5.39e-01 100.0% 45.9%
4941564 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.76 56.0 5.99e-01 94.7% 100.0%
3181845 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.75 62.0 5.59e-01 97.4% 68.0%
3203763 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.67 58.0 4.79e-01 100.0% 54.3%
5034882 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.66 58.0 5.54e-01 100.0% 88.9%
3301048 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.66 55.0 5.48e-01 100.0% 92.5%
5053880 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 57.0 5.40e-01 100.0% 88.9%
3599415 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 53.0 4.41e-01 100.0% 58.6%
3642066 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 48.0 4.67e-01 100.0% 75.6%
4562058 377.1.1.31 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.62 50.0 4.77e-01 97.4% 77.8%
4027754 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.62 50.0 4.65e-01 100.0% 72.0%
5033522 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 49.0 4.58e-01 100.0% 72.0%
3907975 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.61 50.0 4.77e-01 100.0% 80.0%
3335299 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 46.0 3.43e-01 100.0% 31.4%
3463525 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 44.0 4.04e-01 100.0% 72.7%
3308238 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.53 44.0 4.40e-01 100.0% 97.5%
D2 medium residues 57-100
PDB
Domain cluster: rep: IMGVR_UViG_3300005835_000100-3300005835-Ga0078910_10067915__D4-44
D3 medium residues 102-144
PDB
Domain cluster: representative