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NC_048752.1__YP_009843836.1__HWC08_gp024__00024

Bact-Vir

NC_048752.1__YP_009843836.1__HWC08_gp024__00024

Identity

Accession:
NC_048752 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_521B

TaxID: 2510942

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-76
PDB
Domain cluster: rep: NC_029048.2__YP_009221695.1__PHICD211_20094__00110__D3-70
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.70 36.0 4.47e-01 73.0% 90.9%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.70 63.0 5.98e-01 100.0% 84.9%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 58.0 4.90e-01 92.1% 95.2%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.68 56.0 4.80e-01 93.7% 100.0%
3wa1A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.68 55.0 4.15e-01 92.1% 100.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.66 45.0 4.74e-01 90.5% 78.9%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.66 51.0 5.49e-01 96.8% 98.1%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 53.0 4.59e-01 92.1% 96.1%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 5.27e-01 92.1% 100.0%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.64 53.0 4.91e-01 93.7% 91.5%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 53.0 4.21e-01 96.8% 74.6%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 54.0 4.12e-01 98.4% 96.9%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.63 52.0 4.31e-01 93.7% 95.0%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 51.0 4.04e-01 92.1% 100.0%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 46.0 3.83e-01 77.8% 99.1%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.62 51.0 4.32e-01 93.7% 100.0%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 3.98e-01 92.1% 76.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.94e-01 100.0% 79.5%
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.62 52.0 4.58e-01 98.4% 93.9%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 51.0 3.96e-01 92.1% 91.5%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 51.0 3.32e-01 93.7% 89.4%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.28e-01 93.7% 95.9%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 50.0 3.04e-01 93.7% 87.3%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.61 43.0 3.96e-01 74.6% 74.1%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.78e-01 100.0% 52.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.72e-01 95.2% 82.8%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 46.0 3.91e-01 87.3% 82.5%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.81e-01 100.0% 55.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 43.0 4.63e-01 88.9% 92.3%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 44.0 2.81e-01 77.8% 18.5%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 4.20e-01 88.9% 94.4%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.63e-01 96.8% 82.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.59 46.0 4.25e-01 90.5% 96.6%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.21e-01 95.2% 93.6%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 44.0 3.90e-01 84.1% 76.5%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 5.07e-01 90.5% 100.0%
2xdvA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.58 42.0 3.54e-01 77.8% 95.5%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 46.0 3.50e-01 90.5% 89.2%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.57 44.0 4.39e-01 92.1% 84.6%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 3.79e-01 90.5% 50.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.57 47.0 4.81e-01 95.2% 98.3%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.11e-01 100.0% 60.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.22e-01 98.4% 83.3%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.29e-01 92.1% 77.2%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.55 42.0 3.67e-01 81.0% 86.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 37.0 4.14e-01 77.8% 95.7%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 4.04e-01 81.0% 85.2%
2dlxA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 41.0 3.46e-01 84.1% 94.7%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.39e-01 88.9% 60.9%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 3.90e-01 100.0% 96.0%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 43.0 2.76e-01 93.7% 32.4%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 42.0 4.12e-01 92.1% 98.6%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.28e-01 77.8% 76.3%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 43.0 3.83e-01 96.8% 73.1%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3692168 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.78 56.0 3.23e-01 74.6% 14.5%
3236050 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.75 60.0 4.93e-01 85.7% 86.4%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 60.0 6.41e-01 96.8% 98.2%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 6.17e-01 100.0% 100.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 6.04e-01 98.4% 96.4%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 5.65e-01 85.7% 100.0%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.84e-01 98.4% 94.5%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.82e-01 98.4% 94.5%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.79e-01 100.0% 92.7%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 55.0 5.46e-01 96.8% 81.5%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.99e-01 98.4% 98.2%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.48e-01 96.8% 78.6%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.96e-01 100.0% 95.0%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 54.0 5.43e-01 95.2% 81.5%
3486330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.59e-01 96.8% 98.0%
3505083 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.69 52.0 3.21e-01 81.0% 21.1%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.68e-01 98.4% 96.4%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 55.0 5.87e-01 98.4% 98.2%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.43e-01 96.8% 80.0%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.69 53.0 5.66e-01 98.4% 96.4%
3511200 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.68 53.0 4.86e-01 85.7% 92.9%
3878170 5.1.4.549 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28327 0.68 53.0 3.36e-01 85.7% 96.9%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.72e-01 98.4% 98.2%
5054991 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.68 52.0 3.53e-01 82.5% 84.8%
3862126 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.67 51.0 5.27e-01 100.0% 86.7%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.78e-01 95.2% 100.0%
3172856 5.1.4.575 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.67 50.0 3.26e-01 79.4% 27.1%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 55.0 5.36e-01 96.8% 81.4%
3543794 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.67 57.0 4.24e-01 96.8% 81.2%
3874056 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.67 51.0 5.43e-01 85.7% 92.7%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 53.0 5.12e-01 98.4% 78.6%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.66 50.0 4.95e-01 100.0% 78.5%
3718643 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 52.0 4.05e-01 87.3% 67.9%
5054507 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 47.0 4.51e-01 77.8% 100.0%
3251013 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 49.0 3.06e-01 81.0% 21.4%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.09e-01 98.4% 84.1%
3717633 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 47.0 2.85e-01 77.8% 25.5%
3999240 5.1.5.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PROPPIN 0.64 48.0 3.37e-01 82.5% 46.5%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.65e-01 93.7% 88.9%
3301044 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.63 47.0 3.28e-01 79.4% 26.3%
3749834 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.63 49.0 5.21e-01 85.7% 94.5%
3684909 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.63 44.0 4.61e-01 93.7% 85.5%
3432796 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.63 49.0 4.58e-01 87.3% 67.5%
4962256 101.1.2.937 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25943 0.62 51.0 4.26e-01 90.5% 81.8%
4128405 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 47.0 4.57e-01 100.0% 74.3%
3709245 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 48.0 4.34e-01 88.9% 63.5%
4273414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 44.0 4.32e-01 96.8% 70.0%
169882 10.1.1.32 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser 0.60 51.0 3.72e-01 100.0% 50.8%
4193599 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.49e-01 100.0% 73.3%
3539509 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.60 51.0 3.37e-01 98.4% 23.9%
3580534 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.03e-01 87.3% 81.9%
3212890 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 48.0 3.29e-01 93.7% 24.4%
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 44.0 4.88e-01 98.4% 100.0%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 43.0 4.27e-01 95.2% 73.8%
4038642 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 43.0 4.19e-01 96.8% 70.0%
4854958 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 45.0 3.94e-01 100.0% 54.2%
3973553 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 43.0 4.24e-01 98.4% 71.4%
3421470 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 43.0 2.71e-01 77.8% 16.1%
3292420 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 46.0 4.06e-01 100.0% 58.9%
3347504 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.58 47.0 4.61e-01 90.5% 81.4%
3644862 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 46.0 2.89e-01 90.5% 79.7%
3671367 5.1.4.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.57 46.0 2.94e-01 92.1% 84.5%
3300456 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.57 44.0 3.87e-01 87.3% 66.0%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.76e-01 92.1% 79.1%
3266157 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.54 44.0 3.06e-01 98.4% 94.7%
3805018 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 43.0 2.78e-01 92.1% 65.7%
3199895 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.50 45.0 3.91e-01 100.0% 73.7%