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NC_048752.1__YP_009843841.1__HWC08_gp029__00029
Bact-VirNC_048752.1__YP_009843841.1__HWC08_gp029__00029
Identity
- Accession:
- NC_048752 ↗
- Kingdom:
- phage
Quality
82.1
mean pLDDT
Taxonomy
TaxID: 2510942
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-80
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.64 | 52.0 | 4.74e-01 | 89.7% | 86.7% |
| 4arnA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.62 | 50.0 | 3.46e-01 | 94.9% | 25.3% |
| 4bv4R00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.61 | 49.0 | 3.12e-01 | 94.9% | 15.9% |
| 1u02A02 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.61 | 39.0 | 4.02e-01 | 94.9% | 67.1% |
| 3wpwA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.60 | 45.0 | 3.63e-01 | 93.6% | 41.6% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 43.0 | 4.11e-01 | 76.9% | 86.3% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.60 | 48.0 | 4.34e-01 | 89.7% | 87.2% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.60 | 50.0 | 4.32e-01 | 94.9% | 62.7% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 51.0 | 4.42e-01 | 100.0% | 96.8% |
| 2q0iA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 50.0 | 3.38e-01 | 97.4% | 91.0% |
| 7ct3A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.57 | 50.0 | 4.45e-01 | 100.0% | 99.1% |
| 1j3wC00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.57 | 50.0 | 4.24e-01 | 100.0% | 91.7% |
| 1a87A01 | 3.30.1120.60 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin | 0.57 | 48.0 | 4.57e-01 | 98.7% | 97.9% |
| 6h5bB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.57 | 49.0 | 4.28e-01 | 97.4% | 97.5% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 41.0 | 3.39e-01 | 100.0% | 42.0% |
| 3kyeA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.55 | 46.0 | 4.11e-01 | 97.4% | 97.5% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.54 | 45.0 | 3.98e-01 | 91.0% | 95.6% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.36e-01 | 79.5% | 81.4% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 43.0 | 3.62e-01 | 91.0% | 83.8% |
| 1rl1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.57e-01 | 85.9% | 63.0% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.52 | 44.0 | 3.70e-01 | 94.9% | 61.2% |
| 2yfoA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.52 | 43.0 | 2.94e-01 | 93.6% | 96.1% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 46.0 | 4.28e-01 | 100.0% | 87.9% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 42.0 | 3.42e-01 | 94.9% | 62.0% |
| 7csoA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 45.0 | 3.81e-01 | 94.9% | 82.7% |
| 1o7dD01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.52 | 42.0 | 3.07e-01 | 96.2% | 88.1% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.49e-01 | 85.9% | 63.0% |
| 6mv2A01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 3.33e-01 | 84.6% | 56.9% |
| 3p2mA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 43.0 | 2.98e-01 | 94.9% | 70.8% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 43.0 | 3.91e-01 | 100.0% | 80.9% |
| 1jyaB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 36.0 | 3.22e-01 | 100.0% | 49.6% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589304 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.91 | 82.0 | 8.44e-01 | 96.2% | 98.7% |
| 3955817 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.67 | 40.0 | 3.68e-01 | 89.7% | 45.9% |
| 4941167 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.65 | 54.0 | 4.75e-01 | 93.6% | 70.8% |
| 3659455 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.65 | 54.0 | 4.66e-01 | 94.9% | 60.8% |
| 2526324 | 7086.1.1.0 ↗ | 0.63 | 53.0 | 4.96e-01 | 93.6% | 88.4% | |
| 4028149 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.63 | 48.0 | 4.55e-01 | 84.6% | 84.2% |
| 3236988 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.62 | 47.0 | 4.74e-01 | 83.3% | 85.0% |
| 4931934 | 241.9.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like | 0.62 | 50.0 | 4.55e-01 | 87.2% | 89.5% |
| 3409369 | 207.1.1.141 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5, LRR_8 | 0.61 | 52.0 | 3.47e-01 | 93.6% | 30.8% |
| 3839444 | 241.9.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 | 0.61 | 48.0 | 4.16e-01 | 84.6% | 80.0% |
| 4928574 | 241.11.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like | 0.61 | 50.0 | 4.84e-01 | 88.5% | 86.4% |
| 2532167 | 7086.1.1.0 ↗ | 0.60 | 51.0 | 4.86e-01 | 93.6% | 97.8% | |
| 3279474 | 241.11.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR | 0.59 | 47.0 | 4.10e-01 | 84.6% | 96.5% |
| 4484131 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.59 | 51.0 | 3.52e-01 | 98.7% | 46.3% |
| 5030621 | 241.9.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 | 0.59 | 48.0 | 4.27e-01 | 88.5% | 77.3% |
| 3613468 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 42.0 | 4.57e-01 | 75.6% | 98.5% |
| 3291325 | 317.1.1.6 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › RamC_N | 0.57 | 49.0 | 3.67e-01 | 93.6% | 61.6% |
| 3406897 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 49.0 | 3.89e-01 | 94.9% | 71.0% |
| 3603250 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.56 | 48.0 | 4.22e-01 | 98.7% | 94.2% |
| 4975963 | 213.1.1.29 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 | 0.55 | 45.0 | 3.21e-01 | 92.3% | 41.2% |
| 5044707 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.55 | 47.0 | 4.16e-01 | 100.0% | 94.4% |
| 5033617 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 48.0 | 4.15e-01 | 100.0% | 96.0% |
| 3618875 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.55 | 45.0 | 3.75e-01 | 89.7% | 77.0% |
| 5035465 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.55 | 46.0 | 4.12e-01 | 96.2% | 100.0% |
| 4999612 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 47.0 | 4.02e-01 | 98.7% | 99.2% |
| 4998444 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.54 | 47.0 | 4.00e-01 | 100.0% | 97.8% |
| 4929825 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 45.0 | 3.99e-01 | 93.6% | 96.6% |
| 3281830 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.54 | 47.0 | 4.00e-01 | 100.0% | 88.9% |
| 5017089 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.54 | 45.0 | 3.31e-01 | 96.2% | 72.1% |
| 3712990 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 41.0 | 4.28e-01 | 82.1% | 92.9% |
| 3401352 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 47.0 | 4.02e-01 | 94.9% | 95.0% |
| 3439990 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.54 | 40.0 | 3.86e-01 | 80.8% | 85.6% |
| 5071984 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 48.0 | 3.97e-01 | 100.0% | 80.0% |
| 5020520 | 319.1.1.23 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 | 0.53 | 36.0 | 3.50e-01 | 87.2% | 62.2% |
| 4986345 | 319.1.1.23 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 | 0.53 | 36.0 | 3.57e-01 | 87.2% | 65.9% |
| 4456820 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.53 | 40.0 | 4.03e-01 | 96.2% | 80.0% |
| 4978592 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.53 | 44.0 | 3.95e-01 | 97.4% | 100.0% |
| 3586536 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 46.0 | 3.38e-01 | 94.9% | 46.0% |
| 3591940 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.53 | 37.0 | 2.82e-01 | 74.4% | 75.3% |
| 3940247 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.53 | 42.0 | 3.66e-01 | 87.2% | 62.5% |
| 5016731 | 5.1.4.559 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_propel | 0.52 | 47.0 | 2.90e-01 | 100.0% | 36.9% |
| 3921926 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 45.0 | 3.97e-01 | 100.0% | 86.7% |
| 4948155 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 46.0 | 3.93e-01 | 100.0% | 86.9% |
| 4028345 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.52 | 36.0 | 3.05e-01 | 84.6% | 41.4% |
| 3372105 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.52 | 47.0 | 3.99e-01 | 100.0% | 93.6% |
| 4928738 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 45.0 | 3.89e-01 | 100.0% | 92.2% |
| 3473243 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.62e-01 | 92.3% | 93.8% |
| 3705938 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.51 | 44.0 | 3.80e-01 | 94.9% | 60.8% |
| 4939324 | 5.1.4.559 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_propel | 0.51 | 42.0 | 2.81e-01 | 97.4% | 21.6% |
| 5047936 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 41.0 | 3.58e-01 | 87.2% | 88.3% |
| 5063524 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.51 | 42.0 | 3.40e-01 | 94.9% | 61.0% |
| 5050910 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 42.0 | 3.78e-01 | 94.9% | 99.1% |
| 4002671 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.51 | 36.0 | 3.44e-01 | 84.6% | 62.1% |
| 4969372 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 44.0 | 2.63e-01 | 94.9% | 14.1% |
| 3758651 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.51 | 43.0 | 3.33e-01 | 98.7% | 78.4% |
| 3793300 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 44.0 | 2.78e-01 | 98.7% | 53.9% |
| 3239004 | 2003.1.10.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Synapsin | 0.50 | 34.0 | 3.24e-01 | 70.5% | 93.7% |
| 4963350 | 220.1.1.323 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7115 | 0.50 | 42.0 | 3.95e-01 | 98.7% | 86.0% |
| 4312419 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.50 | 43.0 | 3.17e-01 | 98.7% | 91.3% |
D2
high
residues 87-159
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jb7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 42.0 | 3.71e-01 | 87.7% | 80.2% |
| 2opjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 41.0 | 3.93e-01 | 86.3% | 98.8% |
| 3r4kA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 36.0 | 2.76e-01 | 75.3% | 43.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595489 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.61 | 43.0 | 4.65e-01 | 100.0% | 88.3% |
| 4525886 | 109.4.1.1360 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p | 0.56 | 40.0 | 2.38e-01 | 75.3% | 19.2% |
| 4649167 | 2484.1.1.176 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 | 0.52 | 40.0 | 2.52e-01 | 87.7% | 84.9% |