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NC_048752.1__YP_009843899.1__HWC08_gp087__00087

Bact-Vir

NC_048752.1__YP_009843899.1__HWC08_gp087__00087

Identity

Accession:
NC_048752 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-117
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 39.0 3.61e-01 84.8% 49.5%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 37.0 3.71e-01 86.1% 58.3%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 3.73e-01 70.9% 65.4%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.54e-01 72.2% 57.4%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 3.84e-01 86.1% 63.9%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 38.0 3.67e-01 86.1% 57.8%
4qdgA01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 41.0 3.26e-01 92.4% 35.2%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.58 47.0 3.99e-01 89.9% 69.4%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 32.0 3.09e-01 73.4% 46.2%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.98e-01 86.1% 67.8%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 3.29e-01 86.1% 45.2%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 3.83e-01 86.1% 88.5%
1d2oA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.56 34.0 3.48e-01 86.1% 60.0%
4gqzA00 2.60.40.3700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.27e-01 91.1% 38.5%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.47e-01 70.9% 66.1%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.56 34.0 3.54e-01 82.3% 64.9%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 42.0 3.95e-01 87.3% 91.8%
1boxA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.52 37.0 3.49e-01 86.1% 61.1%
1zq7A01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.52 43.0 3.72e-01 91.1% 76.4%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.90e-01 91.1% 69.7%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.50 41.0 3.89e-01 88.6% 83.2%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 42.0 3.49e-01 92.4% 71.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026071 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.68 39.0 3.99e-01 82.3% 58.7%
3595627 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 38.0 3.61e-01 81.0% 49.5%
5055237 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.64 51.0 4.08e-01 87.3% 54.4%
5076111 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.62 39.0 3.79e-01 86.1% 56.7%
4964937 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.62 37.0 3.95e-01 88.6% 67.1%
3999792 11.1.4.72 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_2nd 0.62 39.0 3.66e-01 86.1% 52.6%
5054896 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 39.0 3.63e-01 86.1% 51.0%
4980287 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.61 38.0 3.79e-01 89.9% 58.8%
5070656 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.61 38.0 3.80e-01 89.9% 58.8%
4477564 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 4.15e-01 88.6% 70.5%
4970282 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 39.0 3.74e-01 82.3% 57.8%
4059278 11.1.1.608 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.60 38.0 3.91e-01 84.8% 66.7%
4961041 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 37.0 3.71e-01 86.1% 61.3%
4136835 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 4.34e-01 82.3% 79.5%
5030770 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.59 40.0 3.79e-01 88.6% 58.9%
3906610 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.58 40.0 3.33e-01 70.9% 51.4%
3708643 220.1.1.218 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26661 0.58 46.0 4.08e-01 86.1% 73.9%
4947741 821.1.1.17 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 0.58 40.0 3.89e-01 87.3% 65.9%
4267139 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 34.0 3.90e-01 88.6% 82.5%
5070409 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.57 40.0 3.86e-01 89.9% 64.8%
4170310 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.57 42.0 4.01e-01 88.6% 67.8%
4111785 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.57 40.0 3.77e-01 87.3% 61.1%
3402045 220.1.1.158 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.56 44.0 4.05e-01 87.3% 79.0%
3210917 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 4.14e-01 88.6% 75.3%
4975837 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.92e-01 86.1% 68.9%
3720410 220.1.1.57 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.55 37.0 3.17e-01 70.9% 57.8%
3389929 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 37.0 3.15e-01 70.9% 58.6%
3432441 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 37.0 2.55e-01 74.7% 22.0%
4364215 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 37.0 3.25e-01 70.9% 52.5%
3582019 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.72e-01 86.1% 65.3%
3639662 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 34.0 3.42e-01 74.7% 65.0%
3897565 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 41.0 3.92e-01 89.9% 73.3%
4938962 11.1.1.1410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.52 39.0 3.68e-01 86.1% 65.3%
5037565 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 4.25e-01 87.3% 92.9%
152636 11.1.1.146 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3244 0.52 42.0 3.90e-01 91.1% 69.7%
4251948 11.1.1.1353 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29262 0.51 42.0 3.96e-01 88.6% 82.1%
5040223 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.72e-01 88.6% 66.0%
3990694 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 3.27e-01 82.3% 65.3%
1807141 11.1.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.50 41.0 3.79e-01 88.6% 77.5%
D2 medium residues 118-201
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16475.11 best DUF5052 46.0 6.70e-12 96.4% 36.7%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 35.0 3.79e-01 85.7% 67.1%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 36.0 3.41e-01 71.4% 51.5%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.60 40.0 4.39e-01 91.7% 90.5%
1b4rA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 30.0 3.07e-01 91.7% 51.2%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 33.0 3.49e-01 94.0% 66.7%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.54 43.0 3.90e-01 86.9% 97.5%
1xdpA02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.54 46.0 3.61e-01 100.0% 75.7%
6mjjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.29e-01 70.2% 64.0%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.53 40.0 2.88e-01 82.1% 86.7%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.40e-01 71.4% 64.8%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.33e-01 71.4% 66.1%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.56e-01 100.0% 65.3%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 36.0 3.06e-01 97.6% 44.7%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.24e-01 71.4% 64.5%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.24e-01 97.6% 57.7%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.55e-01 100.0% 67.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3425267 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.65 50.0 5.07e-01 100.0% 83.5%
3428264 390.1.1.6 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 0.65 50.0 5.05e-01 97.6% 83.5%
3431163 390.1.1.6 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 0.65 50.0 4.92e-01 97.6% 77.8%
3644188 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.64 48.0 4.72e-01 97.6% 74.4%
1280955 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 43.0 4.91e-01 84.5% 100.0%
380441 11.1.1.81 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set 0.62 34.0 3.41e-01 95.2% 51.2%
3023338 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 36.0 3.30e-01 71.4% 43.2%
5070402 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.61 32.0 3.28e-01 91.7% 50.0%
3697697 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.61 49.0 4.52e-01 96.4% 67.9%
3381422 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.60 45.0 4.59e-01 100.0% 85.0%
3585693 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.59 48.0 4.65e-01 94.0% 78.9%
3934532 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.59 47.0 4.76e-01 94.0% 87.1%
3925855 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.58 43.0 4.25e-01 92.9% 74.4%
5081326 11.1.1.608 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.58 38.0 4.31e-01 98.8% 87.7%
4136835 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 37.0 3.97e-01 97.6% 75.3%
3247165 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.57 45.0 4.48e-01 97.6% 81.1%
3407050 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.56 44.0 4.41e-01 96.4% 87.1%
5055096 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 32.0 3.26e-01 95.2% 57.5%
5081345 11.1.1.608 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.55 37.0 3.85e-01 98.8% 73.4%
3415354 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.54 46.0 4.55e-01 96.4% 87.8%
5044011 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 34.0 3.58e-01 70.2% 70.7%
163527 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 37.0 3.40e-01 71.4% 63.3%
4317818 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 45.0 4.32e-01 92.9% 84.2%
3861387 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.53 44.0 4.47e-01 95.2% 91.6%
3195037 4114.1.1.0 a+b two layers › PHP14-like › PHP14-like › PHP14-like 0.53 45.0 3.55e-01 97.6% 80.5%
3546769 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 35.0 3.13e-01 70.2% 57.6%
3214689 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 43.0 4.23e-01 92.9% 85.6%
5081704 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 35.0 2.54e-01 97.6% 25.7%
3238561 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 41.0 4.10e-01 96.4% 84.4%
5082908 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 35.0 3.21e-01 97.6% 54.6%
3512295 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 44.0 3.93e-01 97.6% 86.2%
3729515 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.51 38.0 3.07e-01 82.1% 93.8%
3413058 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 40.0 4.02e-01 91.7% 90.0%
3258216 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.51 44.0 3.27e-01 98.8% 84.4%
5013673 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 42.0 3.37e-01 96.4% 76.7%