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NC_048754.1__YP_009844156.1__HWC10_gp001__00001

Bact-Vir

NC_048754.1__YP_009844156.1__HWC10_gp001__00001

Identity

Accession:
NC_048754 ↗
Kingdom:
phage

Quality

93.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_SAC12B

TaxID: 2510941

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-67
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gwlA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.73 49.0 3.38e-01 100.0% 21.5%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.72 63.0 5.66e-01 100.0% 73.0%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.71 64.0 5.99e-01 100.0% 90.7%
2cwoA01 1.20.58.1200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain 0.71 48.0 4.53e-01 77.4% 59.5%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 62.0 5.35e-01 100.0% 64.3%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.67 59.0 5.17e-01 100.0% 73.7%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 58.0 5.17e-01 100.0% 82.6%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 59.0 5.44e-01 100.0% 84.0%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 39.0 4.28e-01 75.8% 71.2%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.66 59.0 5.24e-01 100.0% 75.0%
2b1eA01 1.20.58.1150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 45.0 4.08e-01 77.4% 52.3%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.64 40.0 3.97e-01 93.5% 58.2%
4hb1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 41.0 4.75e-01 77.4% 93.2%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 57.0 5.51e-01 100.0% 89.7%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.63 53.0 5.29e-01 98.4% 95.5%
3f0cA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 53.0 4.03e-01 93.5% 73.6%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 44.0 4.59e-01 75.8% 79.3%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 45.0 4.41e-01 75.8% 76.1%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 44.0 4.42e-01 75.8% 95.2%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.61 46.0 4.28e-01 80.6% 79.7%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 44.0 3.95e-01 75.8% 57.6%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.60 44.0 4.02e-01 77.4% 86.4%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.59 42.0 3.52e-01 75.8% 43.4%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.59 42.0 4.22e-01 75.8% 79.4%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.59 41.0 3.99e-01 75.8% 67.6%
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 42.0 2.74e-01 80.6% 38.3%
8gccA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.57 40.0 3.40e-01 74.2% 84.6%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.57 47.0 4.66e-01 95.2% 98.5%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.57 41.0 3.51e-01 77.4% 47.6%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 46.0 4.19e-01 96.8% 67.0%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.56 49.0 3.69e-01 100.0% 46.3%
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 49.0 4.06e-01 100.0% 63.5%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.56 48.0 4.09e-01 96.8% 86.3%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 43.0 4.26e-01 85.5% 91.2%
4f03B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 39.0 3.05e-01 75.8% 51.0%
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 43.0 3.99e-01 85.5% 90.1%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 3.15e-01 83.9% 71.6%
1euvA01 1.10.418.20 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › 0.53 43.0 3.71e-01 91.9% 64.8%
3gwnA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.53 44.0 3.66e-01 93.5% 71.7%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 43.0 3.51e-01 88.7% 84.1%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 46.0 3.84e-01 100.0% 85.7%
4cxfA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 42.0 3.86e-01 95.2% 73.6%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.52 37.0 3.42e-01 77.4% 61.0%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 48.0 3.99e-01 100.0% 100.0%
2k8oA00 1.20.5.2120 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 37.0 3.80e-01 88.7% 83.3%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 37.0 3.75e-01 98.4% 85.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4575680 589.1.2.1 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.77 52.0 3.65e-01 91.9% 23.8%
3248311 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.75 54.0 3.42e-01 87.1% 15.9%
3351353 632.6.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.72 64.0 5.56e-01 100.0% 86.3%
4360723 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.70 63.0 5.56e-01 100.0% 76.7%
4601603 632.15.1.4 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 0.70 63.0 5.75e-01 100.0% 86.3%
4962469 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.69 50.0 3.69e-01 77.4% 33.1%
3392896 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.69 61.0 5.51e-01 100.0% 81.2%
2122153 3831.1.1.1 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.69 61.0 5.49e-01 100.0% 81.4%
3724595 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.69 48.0 4.86e-01 77.4% 75.0%
3733553 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.68 49.0 3.07e-01 77.4% 15.9%
4010451 3788.1.1.15 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.68 60.0 5.66e-01 100.0% 84.0%
3282638 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.68 49.0 3.75e-01 75.8% 86.7%
3282529 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.68 61.0 5.08e-01 100.0% 77.1%
4114337 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.67 59.0 5.60e-01 100.0% 86.7%
4013842 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 46.0 3.22e-01 71.0% 43.2%
3812751 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 48.0 3.77e-01 77.4% 63.7%
4341411 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 44.0 4.19e-01 77.4% 58.1%
3956906 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.66 47.0 4.49e-01 77.4% 85.3%
5032076 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.65 44.0 3.85e-01 75.8% 46.3%
5059163 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.65 54.0 5.33e-01 93.5% 100.0%
3576223 604.33.1.1 ↗ alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain › RGM_N 0.65 43.0 4.13e-01 79.0% 58.1%
4997208 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.64 53.0 3.50e-01 96.8% 21.7%
4019166 101.1.9.86 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF7593 0.64 50.0 3.53e-01 91.9% 28.1%
3806441 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.64 54.0 3.47e-01 93.5% 41.0%
3398929 5041.1.1.32 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141 0.64 48.0 4.24e-01 80.6% 61.1%
5054184 3273.1.1.0 ↗ alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins 0.64 48.0 3.95e-01 80.6% 46.4%
5049212 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 51.0 3.79e-01 93.5% 33.1%
4964800 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.63 45.0 3.81e-01 75.8% 64.8%
4932281 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.63 45.0 3.91e-01 75.8% 84.2%
3816224 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.63 43.0 4.19e-01 72.6% 71.4%
3253225 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.62 46.0 4.10e-01 77.4% 82.4%
3261857 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.62 44.0 4.36e-01 74.2% 83.1%
3386947 2011.1.1.14 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › DUF4910 0.62 55.0 3.61e-01 100.0% 91.9%
4318044 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.62 52.0 4.74e-01 100.0% 77.8%
3191927 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.62 46.0 3.72e-01 79.0% 55.7%
3409474 4163.1.2.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 0.62 44.0 3.49e-01 75.8% 39.2%
3587458 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.61 44.0 4.19e-01 77.4% 80.0%
3437734 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.61 39.0 3.91e-01 75.8% 63.1%
3583094 109.4.1.75 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IFRD 0.61 42.0 3.16e-01 87.1% 27.9%
4942351 2004.1.1.191 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.61 52.0 3.65e-01 93.5% 34.2%
5014266 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 50.0 4.82e-01 100.0% 86.7%
3666014 632.7.1.45 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF30850 0.60 50.0 4.49e-01 96.8% 65.6%
3231865 604.33.1.1 ↗ alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain › RGM_N 0.60 41.0 4.00e-01 77.4% 64.3%
3283355 150.5.1.51 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100_2 0.60 43.0 3.92e-01 77.4% 61.2%
3219370 198.1.1.1 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.60 38.0 3.54e-01 75.8% 50.0%
3283697 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.59 49.0 4.13e-01 96.8% 84.3%
5050395 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.59 50.0 4.63e-01 98.4% 84.3%
4959130 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 50.0 4.85e-01 100.0% 98.6%
4110242 629.1.1.1 ↗ alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del 0.58 48.0 3.49e-01 100.0% 82.4%
5083369 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.56 43.0 3.80e-01 83.9% 76.3%
3707393 4207.1.1.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) 0.56 44.0 3.41e-01 93.5% 37.2%
3595849 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.56 41.0 4.00e-01 79.0% 82.9%
3746144 192.29.1.273 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › NICE-3 0.55 44.0 4.38e-01 88.7% 95.4%
4600893 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 49.0 3.23e-01 100.0% 33.5%
4015710 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 42.0 3.90e-01 93.5% 67.1%
184727 3495.1.1.1 ↗ alpha bundles › Integrin alpha-L cytoplasmic domain › Integrin alpha-L cytoplasmic domain › Integrin alpha-L cytoplasmic domain › Integrin_alpha 0.51 37.0 3.80e-01 88.7% 83.3%