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NC_048754.1__YP_009844187.1__HWC10_gp032__00032

Bact-Vir

NC_048754.1__YP_009844187.1__HWC10_gp032__00032

Identity

Accession:
NC_048754 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_SAC12B

TaxID: 2510941

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-79
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 54.0 4.95e-01 100.0% 58.9%
3oulA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.71 51.0 3.22e-01 93.2% 15.3%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 43.0 3.96e-01 79.5% 51.8%
5xnrA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 55.0 3.43e-01 100.0% 86.0%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 39.0 3.73e-01 77.3% 50.9%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 40.0 3.00e-01 77.3% 24.4%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.60 43.0 3.80e-01 90.9% 50.7%
2bhuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 3.48e-01 81.8% 51.0%
3nwnA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.60 45.0 2.80e-01 95.5% 12.3%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 39.0 3.64e-01 88.6% 50.9%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.59 49.0 3.67e-01 100.0% 44.0%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 37.0 3.68e-01 77.3% 54.3%
2v5nA02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.57 47.0 3.44e-01 100.0% 76.3%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.57 42.0 3.60e-01 86.4% 48.7%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.56 45.0 2.79e-01 97.7% 12.9%
3nffH00 6.20.250.70 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.55 44.0 3.42e-01 97.7% 58.6%
3s6xC03 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.54 33.0 3.48e-01 88.6% 65.0%
3ka7A02 3.90.660.50 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.54 45.0 2.98e-01 100.0% 77.7%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.48e-01 88.6% 14.5%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.53 39.0 2.84e-01 90.9% 25.0%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 36.0 3.09e-01 84.1% 37.8%
6mkbA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 48.0 3.15e-01 100.0% 58.1%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 41.0 3.00e-01 100.0% 60.3%
3h09A03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 42.0 3.45e-01 100.0% 71.6%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945181 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.72 49.0 3.44e-01 81.8% 23.8%
3218646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 47.0 4.19e-01 100.0% 46.2%
5029687 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 44.0 4.41e-01 81.8% 64.4%
3178258 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.67 52.0 3.48e-01 97.7% 21.1%
4026200 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.65 50.0 4.28e-01 100.0% 52.9%
4034091 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.64 45.0 4.39e-01 93.2% 68.0%
4232525 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.64 44.0 3.13e-01 84.1% 23.7%
4615629 4.1.1.449 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1292 0.61 45.0 3.64e-01 79.5% 41.2%
3482406 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.60 43.0 4.66e-01 90.9% 97.1%
4779630 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.60 43.0 3.80e-01 90.9% 50.7%
3503026 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 48.0 2.93e-01 100.0% 39.7%
3698801 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.58 48.0 2.84e-01 97.7% 15.2%
4131976 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.57 47.0 3.23e-01 100.0% 26.7%
3199626 2002.1.1.56 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.57 44.0 2.55e-01 90.9% 9.3%
4933705 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.57 42.0 3.18e-01 81.8% 31.3%
5062674 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 3.63e-01 95.5% 46.2%
3741277 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.56 42.0 2.52e-01 86.4% 10.6%
3946460 10.12.1.28 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HutD 0.56 40.0 3.01e-01 77.3% 29.6%
3626487 101.1.2.194 ↗ alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH 0.56 41.0 3.13e-01 95.5% 30.4%
4299669 101.1.2.194 ↗ alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH 0.55 38.0 3.01e-01 77.3% 35.2%
3801684 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.55 45.0 3.15e-01 100.0% 92.7%
4951073 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.55 41.0 2.99e-01 84.1% 45.9%
5048008 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.54 44.0 3.01e-01 97.7% 41.7%
3708741 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 2.71e-01 97.7% 12.2%
5073524 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 42.0 3.00e-01 95.5% 76.8%
3986083 10.12.1.28 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HutD 0.53 39.0 3.32e-01 95.5% 46.3%
3240970 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 45.0 3.10e-01 97.7% 92.7%
3629138 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.51e-01 90.9% 60.0%
3382011 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.51 36.0 3.20e-01 100.0% 46.3%
3237030 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.51 42.0 3.15e-01 95.5% 69.6%
4959202 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.50 42.0 3.40e-01 100.0% 46.3%