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NC_048754.1__YP_009844193.1__HWC10_gp038__00038

Bact-Vir

NC_048754.1__YP_009844193.1__HWC10_gp038__00038

Identity

Accession:
NC_048754 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_SAC12B

TaxID: 2510941

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-64
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gyuA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.68 48.0 3.20e-01 72.6% 36.8%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.62 46.0 3.67e-01 79.0% 95.2%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 45.0 3.99e-01 79.0% 80.4%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 45.0 4.10e-01 79.0% 77.1%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.60 39.0 3.19e-01 100.0% 38.7%
4kg0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.56 47.0 3.65e-01 100.0% 59.5%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 3.81e-01 91.9% 74.5%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.56 47.0 4.60e-01 96.8% 94.1%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 40.0 3.51e-01 83.9% 100.0%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.54 41.0 2.84e-01 87.1% 73.1%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.36e-01 100.0% 48.0%
2a90A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 42.0 3.59e-01 90.3% 54.1%
1xezA02 2.70.240.20 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/Hemolysin toxin, cytolysin domain 0.52 46.0 2.79e-01 100.0% 19.3%
1vlpA00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.51 37.0 2.26e-01 75.8% 67.9%
3o44A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 45.0 3.59e-01 100.0% 60.3%
2o0aA00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.51 35.0 2.35e-01 72.6% 24.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3510942 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.82 45.0 4.23e-01 100.0% 45.3%
4177976 2487.1.1.3 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C 0.70 59.0 4.90e-01 96.8% 82.6%
3613928 375.1.1.137 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIB_Zn-ribbon_Tryp 0.70 42.0 4.80e-01 96.8% 84.4%
3882068 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.66 34.0 3.72e-01 93.5% 58.0%
3577814 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.64 30.0 2.88e-01 87.1% 34.3%
3251743 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 47.0 4.16e-01 79.0% 86.9%
3270757 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 46.0 4.20e-01 79.0% 95.0%
3243117 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 45.0 3.84e-01 79.0% 65.0%
3254631 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 46.0 4.51e-01 79.0% 93.8%
907 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 45.0 3.71e-01 79.0% 58.2%
3254634 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.60 46.0 4.29e-01 80.6% 86.7%
3591420 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 33.0 3.76e-01 96.8% 68.9%
3254632 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.59 46.0 4.60e-01 83.9% 95.4%
3794324 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 31.0 3.06e-01 87.1% 44.3%
3293816 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.57 42.0 3.77e-01 93.5% 55.6%
3628498 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.57 31.0 3.01e-01 91.9% 42.9%
3758265 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 42.0 3.57e-01 79.0% 64.0%
4863675 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 44.0 3.69e-01 83.9% 64.8%
3890381 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 42.0 3.87e-01 90.3% 63.7%
3470449 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.55 42.0 3.91e-01 90.3% 65.0%
3746817 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 41.0 3.87e-01 80.6% 86.7%
3935829 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.54 30.0 3.07e-01 93.5% 50.8%
5003055 5086.1.1.232 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › NFACT_N 0.54 38.0 2.90e-01 75.8% 41.3%
3838172 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.54 42.0 3.13e-01 87.1% 80.0%
3598119 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.53 30.0 2.88e-01 93.5% 47.1%
3682037 4357.1.1.3 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.53 41.0 3.29e-01 83.9% 75.2%
4028249 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.53 29.0 3.06e-01 88.7% 59.3%
4221945 375.1.1.203 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1, tRNA-synt_1g 0.53 43.0 2.78e-01 93.5% 46.2%
3711220 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 38.0 3.82e-01 88.7% 73.8%
3337215 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.53 40.0 3.63e-01 82.3% 76.5%
3798336 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.53 40.0 3.93e-01 83.9% 94.3%
3473057 4357.1.1.3 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.52 43.0 3.74e-01 90.3% 73.7%
3810757 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 39.0 2.39e-01 88.7% 42.1%
3879076 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.50 40.0 3.72e-01 90.3% 68.8%
4960634 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.50 36.0 2.75e-01 77.4% 43.2%