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NC_048754.1__YP_009844196.1__HWC10_gp041__00041

Bact-Vir

NC_048754.1__YP_009844196.1__HWC10_gp041__00041

Identity

Accession:
NC_048754 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_SAC12B

TaxID: 2510941

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-65
PDB
Domain cluster: rep: NC_012530.1__YP_002790708.1__lb338_phage_29__00029__D3-55
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.66 46.0 2.94e-01 74.1% 46.0%
1y7rA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 41.0 3.11e-01 70.4% 79.5%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 48.0 3.59e-01 87.0% 63.0%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 51.0 4.00e-01 100.0% 82.3%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 39.0 4.25e-01 88.9% 89.1%
4pphA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 42.0 2.98e-01 92.6% 63.6%
3h5eA00 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.53 42.0 3.21e-01 98.1% 91.6%
3d4iB01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 42.0 2.82e-01 90.7% 91.8%
3i9sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 40.0 2.94e-01 87.0% 51.6%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.51 42.0 4.03e-01 100.0% 84.6%
4l2iA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 38.0 2.70e-01 88.9% 73.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044876 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.70 55.0 4.88e-01 87.0% 80.0%
3975404 4137.1.1.1 ↗ a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 0.64 48.0 4.40e-01 94.4% 62.9%
4116977 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.63 49.0 3.49e-01 92.6% 26.7%
3289105 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.60 40.0 3.64e-01 70.4% 56.2%
4662124 2498.1.1.141 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M11 0.60 52.0 3.25e-01 100.0% 23.5%
5080644 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.12e-01 83.3% 77.3%
3244540 375.1.1.89 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like 0.59 40.0 3.63e-01 70.4% 72.0%
3579075 380.1.1.13 ↗ few secondary structure elements › Kringle-like › Kringle-like › Kringle-like › PF25866 0.59 51.0 4.32e-01 100.0% 69.1%
3574196 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.59 40.0 3.87e-01 92.6% 63.3%
3282108 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 3.48e-01 100.0% 32.9%
5033274 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.57 38.0 2.92e-01 70.4% 82.3%
4871803 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.54 42.0 2.78e-01 87.0% 86.8%
3589155 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.54 38.0 4.00e-01 94.4% 82.0%
3962766 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.53 45.0 3.62e-01 100.0% 61.7%
4497845 309.1.2.1 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.53 44.0 3.09e-01 92.6% 71.4%
None — 0.53 44.0 3.14e-01 100.0% 36.6%
3770199 2485.1.1.43 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 0.53 40.0 3.21e-01 83.3% 63.6%
4945797 309.1.2.1 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.52 41.0 2.97e-01 88.9% 91.5%
3216781 213.1.1.49 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1248 0.52 42.0 3.21e-01 90.7% 56.9%
2388540 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 41.0 2.85e-01 94.4% 41.7%
3226464 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 42.0 3.24e-01 96.3% 45.2%
5037044 2003.4.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Thr_synth_N 0.51 36.0 2.49e-01 81.5% 42.6%
3788224 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.50 41.0 3.54e-01 98.1% 66.3%