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NC_048754.1__YP_009844237.1__HWC10_gp082__00082

Bact-Vir

NC_048754.1__YP_009844237.1__HWC10_gp082__00082

Identity

Accession:
NC_048754 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_SAC12B

TaxID: 2510941

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-75
PDB
Domain cluster: rep: MW824372.1__QZI86969.1__MYOV056v2_p0196__00195__D5-73
D2 high residues 98-181
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.67 61.0 5.09e-01 100.0% 64.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.68 59.0 4.72e-01 100.0% 49.1%
3879791 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 58.0 4.22e-01 100.0% 36.4%
3397473 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.65 57.0 5.05e-01 98.8% 67.5%
3489023 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.65 56.0 5.01e-01 100.0% 68.3%
D3 high residues 331-383
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 72.0 6.54e-01 100.0% 70.6%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 4.03e-01 100.0% 81.9%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.56 38.0 3.59e-01 71.7% 97.0%
1ihnA00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.56 43.0 3.67e-01 100.0% 79.6%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 45.0 4.57e-01 100.0% 98.1%
4c2mA04 3.30.1490.180 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii 0.53 42.0 3.74e-01 100.0% 59.7%
2cyjA00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.53 46.0 3.60e-01 100.0% 81.2%
2mctA00 2.60.40.4250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.34e-01 88.7% 84.3%
2w42B01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 36.0 2.72e-01 81.1% 69.6%
1x9mA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 2.80e-01 92.5% 70.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.85 72.0 6.51e-01 100.0% 69.6%
3949142 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 39.0 4.42e-01 100.0% 100.0%
4196780 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 37.0 4.26e-01 96.2% 100.0%
3273420 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 44.0 2.78e-01 100.0% 26.7%
3257319 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.51 38.0 3.16e-01 100.0% 44.0%
1096061 3375.1.1.1 ↗ beta barrels › Single-stranded DNA-binding protein DdrB › Single-stranded DNA-binding protein DdrB › Single-stranded DNA-binding protein DdrB › DdrB 0.50 40.0 3.05e-01 88.7% 59.4%
D4 medium residues 216-313
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 38.0 4.37e-01 100.0% 81.4%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 35.0 3.66e-01 95.9% 57.4%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.57 34.0 3.69e-01 86.7% 70.0%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 32.0 3.71e-01 73.5% 82.4%
1v57A03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 3.48e-01 77.6% 82.6%
3qfmA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 36.0 2.79e-01 73.5% 65.9%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 33.0 3.67e-01 92.9% 81.6%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 37.0 3.83e-01 90.8% 77.9%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 28.0 2.54e-01 81.6% 33.1%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3425673 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.85 43.0 6.04e-01 82.7% 100.0%
3448800 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.79 43.0 4.18e-01 88.8% 49.1%
3671924 4325.1.1.12 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › AP2 0.77 32.0 4.95e-01 84.7% 100.0%
3629460 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.59 31.0 2.28e-01 91.8% 17.1%
3483643 223.2.1.49 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C12orf66_like 0.58 37.0 3.21e-01 98.0% 40.0%
3581945 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.55 25.0 3.03e-01 87.8% 61.7%
3948977 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 26.0 2.51e-01 75.5% 37.3%
3983195 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 23.0 2.98e-01 75.5% 71.1%
3356654 221.1.2.20 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e 0.52 27.0 3.36e-01 77.6% 87.3%