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NC_048754.1__YP_009844302.1__HWC10_gp154__00147

Bact-Vir

NC_048754.1__YP_009844302.1__HWC10_gp154__00147

Identity

Accession:
NC_048754 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_SAC12B

TaxID: 2510941

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v9rB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.80 55.0 4.83e-01 72.0% 50.0%
6mvtA03 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.77 53.0 3.36e-01 78.0% 14.3%
3lybC00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.74 44.0 3.21e-01 90.0% 22.4%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 4.79e-01 96.0% 45.3%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 4.75e-01 98.0% 45.6%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 4.60e-01 96.0% 67.5%
1rsgA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 49.0 3.09e-01 72.0% 27.8%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.67 51.0 3.20e-01 82.0% 16.0%
6denA03 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.62 40.0 2.53e-01 70.0% 14.5%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 35.0 2.65e-01 92.0% 22.0%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 49.0 2.90e-01 98.0% 93.3%
1qwkA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.57 33.0 2.02e-01 70.0% 9.3%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.57 34.0 2.99e-01 70.0% 35.9%
3kfvA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 3.03e-01 72.0% 36.0%
2wnsA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 2.74e-01 80.0% 24.9%
1ta9B01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 36.0 2.50e-01 70.0% 45.4%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.51 42.0 3.01e-01 90.0% 47.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026519 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.86 58.0 4.10e-01 70.0% 94.8%
3280942 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.79 55.0 3.49e-01 76.0% 15.4%
3360754 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.78 54.0 3.82e-01 72.0% 33.8%
4928248 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 66.0 4.89e-01 98.0% 37.7%
4978825 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.75 66.0 4.90e-01 96.0% 67.5%
3395806 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.74 62.0 3.77e-01 92.0% 38.0%
3511414 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.73 64.0 3.77e-01 100.0% 38.1%
4002132 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.68 56.0 3.51e-01 100.0% 16.9%
3899209 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.66 59.0 3.86e-01 100.0% 25.1%
3602715 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.65 55.0 4.16e-01 96.0% 63.2%
3798928 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.64 53.0 3.09e-01 92.0% 21.7%
5037761 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.58 44.0 3.09e-01 84.0% 50.3%
5058268 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.53 40.0 3.17e-01 86.0% 71.3%
4002635 859.1.1.1 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.53 42.0 3.02e-01 88.0% 30.3%
4968768 3433.1.1.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.51 39.0 4.32e-01 82.0% 100.0%
3799664 2485.1.1.60 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 1-cysPrx_C 0.51 40.0 3.08e-01 94.0% 62.2%