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NC_048754.1__YP_009844314.1__HWC10_gp142__00159

Bact-Vir

NC_048754.1__YP_009844314.1__HWC10_gp142__00159

Identity

Accession:
NC_048754 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_SAC12B

TaxID: 2510941

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-58
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i3nA01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.71 49.0 3.62e-01 70.7% 31.2%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 47.0 4.76e-01 70.7% 74.6%
5h28A02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 50.0 4.06e-01 77.6% 67.0%
2xpiD00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 56.0 3.27e-01 100.0% 27.4%
8amzO01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 52.0 3.25e-01 94.8% 34.4%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 45.0 3.49e-01 77.6% 57.3%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.61 45.0 3.80e-01 77.6% 58.7%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.58 44.0 2.88e-01 82.8% 56.4%
2d6yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 39.0 2.90e-01 86.2% 25.8%
3craB01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.54 48.0 4.21e-01 98.3% 74.4%
3d0cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 39.0 2.64e-01 96.6% 55.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032059 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 54.0 4.18e-01 77.6% 58.4%
3830650 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.69 59.0 4.43e-01 93.1% 78.5%
3305040 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.66 56.0 4.13e-01 93.1% 48.0%
3332883 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.66 56.0 4.11e-01 93.1% 67.3%
3752138 226.1.1.10 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › KLHL33-like_BTB_POZ 0.66 47.0 4.16e-01 77.6% 51.8%
1175575 109.4.1.292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like 0.66 45.0 4.55e-01 70.7% 80.7%
D2 medium residues 59-109
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yn7A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.87 80.0 5.11e-01 100.0% 72.0%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.85 61.0 4.18e-01 74.5% 27.9%
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 67.0 6.70e-01 98.0% 94.3%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.78 57.0 5.44e-01 78.4% 66.7%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.76 54.0 5.12e-01 76.5% 62.9%
3sllA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.72 54.0 5.19e-01 84.3% 100.0%
4mi2A02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.71 49.0 4.80e-01 78.4% 65.5%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.71 53.0 5.38e-01 84.3% 83.7%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.67 56.0 5.42e-01 100.0% 83.3%
5c9gA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.66 51.0 5.00e-01 86.3% 77.2%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.65 47.0 4.61e-01 86.3% 70.7%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.63 45.0 4.25e-01 78.4% 61.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4986013 4994.1.1.0 ↗ alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like 0.89 78.0 6.50e-01 96.1% 62.4%
4959134 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.72 61.0 4.21e-01 100.0% 92.6%
4637522 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.66 54.0 4.23e-01 92.2% 44.3%
4333013 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.66 54.0 4.69e-01 92.2% 63.7%
3578819 605.1.1.154 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MARCHF6_C 0.63 48.0 4.22e-01 90.2% 55.3%