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NC_048754.1__YP_009844319.1__HWC10_gp137__00164

Bact-Vir

NC_048754.1__YP_009844319.1__HWC10_gp137__00164

Identity

Accession:
NC_048754 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-243
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3canA00 3.80.30.10 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › pyruvate-formate lyase- activating enzyme 0.68 48.0 5.60e-01 72.1% 100.0%
5v1qB01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 60.0 5.51e-01 93.8% 78.0%
2zadA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.66 53.0 5.32e-01 97.3% 81.3%
2a5hA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 59.0 5.42e-01 93.8% 84.6%
1t7lA02 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.66 62.0 5.26e-01 99.6% 89.0%
2pgeA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.66 52.0 5.22e-01 96.0% 80.8%
1q7zA01 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.65 60.0 5.41e-01 98.7% 92.0%
3dxiA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 57.0 5.12e-01 97.3% 70.2%
3a9iA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 55.0 5.25e-01 97.3% 78.4%
7wmzC01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.63 57.0 5.28e-01 96.5% 100.0%
1xwyA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 53.0 5.08e-01 90.7% 95.8%
2fliC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 50.0 5.11e-01 97.3% 86.8%
4g56A01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.62 57.0 5.35e-01 100.0% 98.6%
3inpA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 49.0 5.04e-01 96.9% 86.2%
3ctlA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 49.0 5.05e-01 96.5% 85.8%
1ypxA00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.62 57.0 5.08e-01 99.6% 98.1%
4mwaA00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.61 57.0 5.40e-01 98.2% 90.0%
2bvdA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 57.0 5.31e-01 99.1% 99.6%
1a2oA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 30.0 3.89e-01 90.7% 78.9%
4zxoA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 56.0 4.85e-01 99.1% 89.0%
1nf7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 52.0 4.10e-01 90.3% 80.8%
1tqxA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 49.0 4.99e-01 97.3% 86.4%
5xkcA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.61 56.0 4.46e-01 99.6% 94.6%
5cxpA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 56.0 5.21e-01 99.1% 99.3%
3qfwB02 3.20.20.110 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.60 54.0 5.21e-01 97.8% 86.8%
3ua3B01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.59 52.0 4.88e-01 94.7% 86.0%
4d8lA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.59 54.0 4.90e-01 97.8% 86.4%
1vliA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 54.0 4.92e-01 100.0% 85.3%
3qfeB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 52.0 4.68e-01 97.8% 71.9%
1iv8A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 52.0 4.74e-01 99.1% 96.7%
1yeyA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.57 52.0 4.68e-01 97.8% 72.7%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 29.0 3.75e-01 87.2% 86.2%
2qdeA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.57 52.0 5.17e-01 98.7% 95.0%
2qddA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.57 51.0 5.05e-01 98.7% 91.6%
3ijlA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.57 51.0 5.09e-01 98.2% 93.9%
8fumA01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.57 52.0 4.50e-01 98.2% 87.4%
4df0A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 46.0 4.87e-01 97.8% 96.0%
1eepA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 53.0 4.70e-01 100.0% 85.7%
2ajtA01 3.40.50.10940 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 32.0 3.62e-01 92.0% 70.3%
3qw3A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 52.0 5.08e-01 100.0% 96.4%
2qiwA01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.56 45.0 4.48e-01 97.8% 81.4%
3ddmA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.55 50.0 4.99e-01 98.7% 92.9%
1vhcF00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 47.0 4.82e-01 96.9% 94.4%
2iqtA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 49.0 4.53e-01 96.9% 73.9%
3tbfA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 30.0 3.63e-01 91.6% 79.9%
2a7rD00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 51.0 4.51e-01 100.0% 78.5%
5ereA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 32.0 3.99e-01 95.1% 94.9%
6ofuA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 48.0 4.61e-01 99.1% 84.2%
5izlA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 35.0 3.88e-01 89.4% 81.9%
3no3A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.53 47.0 4.64e-01 97.3% 90.3%
4rlqA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 29.0 2.84e-01 94.2% 49.4%
3a9uA02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 26.0 3.21e-01 92.9% 74.8%
4iqyB00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.51 37.0 3.83e-01 99.6% 77.6%
1amuA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 24.0 2.82e-01 92.9% 59.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995218 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.71 61.0 5.77e-01 89.4% 94.6%
146886 2002.1.1.28 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRAI 0.70 38.0 4.85e-01 75.7% 88.8%
5035238 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 58.0 5.59e-01 88.1% 96.5%
4943844 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 61.0 5.89e-01 94.2% 98.4%
5023953 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 63.0 5.61e-01 98.7% 92.7%
5053413 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 61.0 5.66e-01 94.2% 92.7%
5063125 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 58.0 5.71e-01 89.8% 95.4%
4148742 2002.1.1.234 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2+Meth_synt_1 0.67 63.0 5.27e-01 100.0% 89.7%
4155489 2002.1.1.234 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2+Meth_synt_1 0.66 62.0 4.20e-01 100.0% 42.0%
3603596 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 61.0 5.63e-01 98.7% 87.5%
5043101 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 58.0 5.14e-01 95.6% 97.5%
5038426 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 60.0 5.34e-01 97.3% 88.2%
5068058 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 59.0 5.42e-01 97.8% 91.7%
430852 2002.1.1.154 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 0.64 55.0 4.41e-01 88.9% 88.0%
4479401 2002.1.1.234 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2+Meth_synt_1 0.64 54.0 4.52e-01 88.9% 94.0%
4183983 2002.1.1.154 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 0.64 54.0 4.44e-01 88.9% 92.3%
3940287 2002.1.1.33 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.63 59.0 4.43e-01 99.1% 61.9%
3936345 2002.1.1.33 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.63 58.0 4.60e-01 98.2% 71.8%
3236997 2002.1.1.33 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.63 58.0 4.38e-01 98.7% 62.1%
3972351 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.63 58.0 4.79e-01 100.0% 93.3%
4001202 2002.1.1.33 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.62 57.0 4.86e-01 97.8% 90.6%
4677393 2002.1.1.37 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.61 50.0 4.99e-01 95.6% 83.5%
4102059 2002.1.1.37 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.60 50.0 4.95e-01 96.0% 83.0%
1870636 2002.1.1.85 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_30 0.60 55.0 5.03e-01 97.8% 94.9%
3251564 2002.1.1.234 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2+Meth_synt_1 0.60 55.0 4.36e-01 99.1% 94.5%
4996332 2002.1.1.236 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS 0.59 43.0 4.89e-01 99.6% 97.7%
5036700 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.58 52.0 5.08e-01 96.0% 90.4%
5011267 2002.1.1.154 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 0.58 52.0 4.64e-01 96.5% 99.7%
4599952 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 49.0 4.90e-01 95.6% 87.7%
4270096 2002.1.1.28 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRAI 0.58 52.0 5.31e-01 100.0% 99.1%
322698 2002.1.1.174 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.57 51.0 4.97e-01 98.7% 86.1%
4993147 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.57 53.0 5.20e-01 99.1% 92.6%
4929269 2002.1.1.37 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.57 53.0 4.97e-01 99.6% 86.7%
4941332 2002.1.1.37 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.56 50.0 5.19e-01 97.8% 100.0%
3247604 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.56 33.0 3.61e-01 94.2% 68.6%
3788146 2002.1.1.77 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.56 48.0 4.55e-01 91.6% 91.5%
3600358 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.56 31.0 3.06e-01 93.4% 49.4%
3594853 2002.1.1.37 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.55 52.0 4.94e-01 100.0% 90.4%
3805091 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 33.0 3.62e-01 97.8% 70.3%
3601915 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.55 32.0 3.00e-01 96.0% 45.9%
4154830 2002.1.1.28 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRAI 0.55 49.0 5.07e-01 97.8% 99.5%
3700317 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 31.0 3.11e-01 93.8% 51.5%
162577 2002.1.1.14 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glycolytic 0.55 49.0 4.53e-01 96.9% 73.9%
3194851 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 34.0 3.49e-01 94.2% 63.3%
3741239 2002.1.1.77 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.55 47.0 4.77e-01 91.6% 93.3%
3818551 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 31.0 2.98e-01 94.2% 48.4%
4975462 2003.6.1.0 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.52 45.0 3.92e-01 92.9% 74.8%
3291412 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 29.0 3.23e-01 92.9% 66.9%
4848970 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 34.0 3.76e-01 93.8% 83.2%
3679239 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 27.0 2.88e-01 94.7% 54.5%
3258609 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 42.0 4.36e-01 92.9% 93.3%
5073560 7584.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.51 29.0 3.67e-01 91.6% 91.9%
3402396 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 30.0 2.92e-01 94.7% 51.8%