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NC_048754.1__YP_009844343.1__HWC10_gp113__00188

Bact-Vir

NC_048754.1__YP_009844343.1__HWC10_gp113__00188

Identity

Accession:
NC_048754 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_SAC12B

TaxID: 2510941

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-115
PDB
Domain cluster: rep: hypothetical_protein_H012_gp278__YP_007354612__Acanthamoeba_polyphaga_moumouvirus__1269028__D27-104
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08719.18 best NADAR 37.8 3.30e-09 100.0% 53.4%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8bauA01 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.81 76.0 5.72e-01 100.0% 45.9%
2b3wA00 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.78 67.0 5.23e-01 100.0% 45.8%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.69 39.0 4.33e-01 96.4% 70.1%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 34.0 3.21e-01 82.1% 44.8%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 40.0 4.34e-01 97.6% 98.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3180309 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 81.0 5.94e-01 100.0% 50.5%
3998019 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 78.0 5.91e-01 100.0% 45.0%
3789927 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 80.0 6.07e-01 100.0% 49.4%
3230388 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 80.0 5.93e-01 100.0% 46.2%
3972372 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.85 77.0 5.82e-01 100.0% 44.7%
3279758 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.84 76.0 6.08e-01 100.0% 53.7%
3218293 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.83 78.0 5.63e-01 100.0% 41.8%
3616731 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.82 75.0 5.90e-01 100.0% 51.3%
3797441 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.82 74.0 5.95e-01 100.0% 52.9%
4835580 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.81 76.0 6.07e-01 100.0% 55.0%
4018277 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.80 75.0 5.70e-01 100.0% 55.0%
7671 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.78 67.0 5.32e-01 100.0% 48.1%
3230342 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.73 66.0 4.91e-01 100.0% 46.7%
3727193 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 40.0 4.91e-01 92.9% 98.0%
3279350 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.56 39.0 4.01e-01 71.4% 91.3%
3462221 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 33.0 2.49e-01 100.0% 23.3%
4466183 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.54 32.0 3.00e-01 97.6% 45.7%
3393570 102.1.1.61 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › NCD1 0.53 37.0 3.63e-01 72.6% 100.0%